Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05480 315 / 2e-104 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1) AT3G14920 213 / 4e-65 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017437 [exp] 436 / 3e-151 AT5G05480 605 / 0.0 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1) Lus10017926 [exp] 197 / 5e-59 AT3G14920 649 / 0.0 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1) Lus10025775 [exp] 186 / 5e-55 AT3G14920 568 / 0.0 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1) Lus10025771 [exp] 146 / 3e-40 AT3G14920 396 / 1e-130 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1) Lus10035890 [exp] 59 / 7e-10 AT3G14920 259 / 1e-79 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G185100 [exp] 314 / 2e-104 AT5G05480 601 / 0.0 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1) Potri.008G072400 [exp] 300 / 6e-99 AT5G05480 577 / 0.0 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1) Potri.011G109700 [exp] 226 / 6e-70 AT3G14920 708 / 0.0 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12222 [flax] [poplar] PNGaseA Peptide N-acetyl-beta-D-glucosaminyl asparaginase amidase A
Representative CDS sequence Show only first row Show all	>Lus10007518 pacid=23176461 polypeptide=Lus10007518 locus=Lus10007518.g ID=Lus10007518.BGIv1.0 annot-version=v1.0 ATGATGCTCGAGAACATCGTTAACAACGTCTACACCGGCATTTACCACGTCGATGTGTTCTTCCTCTTCTACAGTGCTGAGGCTGTCAGTTCTGATCCCG GAGCAAAAATTAGTGTCCTGGAAGAAGGAAGAGGTGAGACGACGACGAAGGATTCCCCGGCTGATTTGGTGATTCCGATTTCGTCAAGCGACGGTTACGA GAAAGGATTCTGGTTCGTAATCGACGGAGGAGAATCCGATCTACGTTCGAAGGAAGTCCGATTTCCTTTGAATACAAGGAAAGCAGTGCTGGGGCTTTAT GTTTCGTTCCATGGAAATGACGAGTTCTGGTACTCGAATCCGCCGGATTCGTACATTCAAGTCAACAATCTGACCACGGGGAGAGGCAACGGCGCTTACA GAGAAGTGTTTGTCACGATCGACGGTGAAATGATCGGATCGGAGGTTCTTTTCCCCGTGGTGTTCACCGGCGGGATTAACCCATTGTTCTGGGAACCGGT GGTGGCGATCGGCGCTTTCCATCTCCCATCATATGATTACGATTTGTCCCCCGTGCTGGGACTGGTACTGGATGGAAAGCCTCACAAGATTAGCGTCGGA GTTAGCGACGGAATCTCGTATTGGCTAATCGACGTGAATCTGCACATCTGGTTGGACAGTGGTTCCTCGAGAGTGGAGGCGAAATCAGTCGCCTACGACA GTCCAGCCTCGTACATCACTCGAGAGGAATAG
AA sequence Show only first row Show all	>Lus10007518 pacid=23176461 polypeptide=Lus10007518 locus=Lus10007518.g ID=Lus10007518.BGIv1.0 annot-version=v1.0 MMLENIVNNVYTGIYHVDVFFLFYSAEAVSSDPGAKISVLEEGRGETTTKDSPADLVIPISSSDGYEKGFWFVIDGGESDLRSKEVRFPLNTRKAVLGLY VSFHGNDEFWYSNPPDSYIQVNNLTTGRGNGAYREVFVTIDGEMIGSEVLFPVVFTGGINPLFWEPVVAIGAFHLPSYDYDLSPVLGLVLDGKPHKISVG VSDGISYWLIDVNLHIWLDSGSSRVEAKSVAYDSPASYITREE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05480			Peptide-N4-(N-acetyl-beta-gluc...		Lus10007518 [exp]	0	1
AT5G05480			Peptide-N4-(N-acetyl-beta-gluc...		Lus10007519 [exp]	14.2	0.5091
					Lus10039427 [exp]	145.3	0.5085
					Lus10022109 [exp]	210.8	0.5041

Compare expression of checked genes

Lus10007518 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.