Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40280 731 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G56080 700 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G34300 630 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G29470 621 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G51070 612 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G64030 609 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G39750 486 / 2e-164 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G06050 485 / 3e-164 Putative methyltransferase family protein (.1) AT1G77260 484 / 3e-164 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G19430 481 / 3e-162 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017436 [exp] 1120 / 0 AT2G40280 739 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10040950 [exp] 928 / 0 AT2G40280 753 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10029736 [exp] 606 / 0 AT1G29470 1053 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10042767 [exp] 605 / 0 AT1G29470 1056 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10018954 [exp] 598 / 0 AT1G29470 1047 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10028650 [exp] 592 / 0 AT1G29470 1036 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10020894 [exp] 584 / 0 AT5G64030 1019 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10028354 [exp] 581 / 0 AT3G51070 1051 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10019644 [exp] 572 / 0 AT5G64030 922 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G185000 [exp] 797 / 0 AT2G40280 810 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G075800 [exp] 607 / 0 AT1G29470 1048 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.005G118100 [exp] 602 / 0 AT3G51070 990 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G184500 [exp] 600 / 0 AT1G29470 1050 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.005G065200 [exp] 590 / 0 AT5G64030 1078 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G017400 [exp] 589 / 0 AT3G51070 960 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G104000 [exp] 589 / 0 AT5G64030 1022 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G077100 [exp] 488 / 2e-165 AT1G77260 907 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.008G059500 [exp] 484 / 3e-164 AT2G39750 1040 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G199300 [exp] 466 / 8e-157 AT2G39750 998 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03141 [flax] [poplar] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10007520 pacid=23176475 polypeptide=Lus10007520 locus=Lus10007520.g ID=Lus10007520.BGIv1.0 annot-version=v1.0 ATGTCGCTGAGCAAGCTGATGAGGGAGCGAACCTTCGGGGTGGCCTTCTTCCTCTTCCTATTCGTCTTCCTCGTCTCCATCACTTTCTTCTTCCTCTCCA GCGGCAAGACCGTCGAGCTCCCTTACTACTTCTCCCTCGCCGATCGCTCCGACGTCTCCACCGCCACAACAACAGCAGCTGAGCTTCCTCCCCCTCCGCC TCCGCCTCCGAAGGAGGCACAGAAGGAGGCGGAGGTCACCATCTCTCCCAAGGACTCACCGGCTCTCGCGGCAAGGAAGTCCAACTTCCCTACCGCCCCG GCTCTCGACGTGACGTGGCATCTGTGCAGCGAACGGAAGCAGGCGATGGTGGATTACATCCCTTGTTTGGATAACACCGACGCGATTAAGAGTCTTCCGT CGAGGCGGCACATGGAGCATCGCGAGCGGCATTGCCCAAAGCCTGCGCCCGTCAGGTGTTTGATCCCGATCCCCAAAGGATACAAGCAGCCTATACCCTG GCCTAAGAGCAGAGACATGATATGGTACGACAATGTGCCTCATCCTAAGCTAGTGGAGTACAAGAAGAATCAGAACTGGGTCCGCAAGGAAGATGATCAT TTCGTTTTCCCTGGAGGTGGGACTCAGTTCAAGGATGGAGTCGCCGGCTACGCCGGCTTCATTCAGAAGACTGTACCAGCCATCGATTGGGGGAGACACA TAAGAGTAGCTCTAGACGTGGGTTGCGGTGTTGCTAGCTTTGGTGGTTATTTACTAGACAAACAAGTTCTCACCATGTCCATTGCGCCAAAAGATGAACA CGAAGCTCAGATCCAATTCGCTCTCGAACGAGGGATACCTGCTTTCCTCTCTGTGATTGGGACTAAACAGCTTGTGTTTCCTGATAATTCTTTCGACCTG GTACATTGTGCCAGGTGTCGGGTTCACTGGGATGCACAGGGTGGGAAACCGCTCCTGGAGCTGAATAGGATCTTGAGGCCTGGAGGTTTCTTTGTATGGT CAGCTACACCTGTGTACCGTGACGACGAAAGAGATGCAAGTGTTTGGAAAATTATGGTAGCGTTGACGGAATCTATGTGCTGGAAGGTTGTTTCAAAGAC AACAGATTCGACAGGAATCGGACTTGTAATCTATCAGAAGCCAGAGTCTCCTTCTTGCTACGAGAAACGCCCAGAAAACAACCCTCCTCTTTGCGATCAA AACGACACAAAAAACGTTTCATGGTATACGCCTCTCCGCAGCTGCATTTCTAAACTTCCACTCGATAAACAAGGGGAAGTCATGAACTGGCCAGTAACAT GGCCGTACAGGATCAACACTCTGCCGGCATCCCTACCGTCAGAACCCGGGATTGTAGAACAGTACAACGCAGATAACAGACGTTGGGCAGACCTAGTATC CAATACTTACCTCACGAAATTCAACATAAGCTGGGGCGGTATTCGCAATGTAATGGATATGAACGCTGGCTATGGAGGGTTTGCTGCAGCACTAATTGAT CTTCCTTACTGGGTAATGAATGTTGTCCCAGTCACCGAGAAAGACACCCTCCCGATAATATTCGACCGAGGGATGATCGGAGTCTACCACGACTGGTGCG AGTCGTTCAACACTTACCCTCGTACCTACGATCTCGTGCATGCCAGCTTCATCTTCAAATCCCTGTCAGAAAGGTGTGACCTGGTAGATGTGGGATTAGA GATTGATCGGATAGTTCGACCGGGCGGATATTTTCTGGCTTTCGAGACAATGGAATCTATCAACAGCCTCACCGCTATACTGAAGTCGCTCCATTGGTCG GTTAAAGTTCACAAAGCTCAGTACATGGTCGCCGCCAAAGGCTTCTGGCGTCCCAGTTGA
AA sequence Show only first row Show all	>Lus10007520 pacid=23176475 polypeptide=Lus10007520 locus=Lus10007520.g ID=Lus10007520.BGIv1.0 annot-version=v1.0 MSLSKLMRERTFGVAFFLFLFVFLVSITFFFLSSGKTVELPYYFSLADRSDVSTATTTAAELPPPPPPPPKEAQKEAEVTISPKDSPALAARKSNFPTAP ALDVTWHLCSERKQAMVDYIPCLDNTDAIKSLPSRRHMEHRERHCPKPAPVRCLIPIPKGYKQPIPWPKSRDMIWYDNVPHPKLVEYKKNQNWVRKEDDH FVFPGGGTQFKDGVAGYAGFIQKTVPAIDWGRHIRVALDVGCGVASFGGYLLDKQVLTMSIAPKDEHEAQIQFALERGIPAFLSVIGTKQLVFPDNSFDL VHCARCRVHWDAQGGKPLLELNRILRPGGFFVWSATPVYRDDERDASVWKIMVALTESMCWKVVSKTTDSTGIGLVIYQKPESPSCYEKRPENNPPLCDQ NDTKNVSWYTPLRSCISKLPLDKQGEVMNWPVTWPYRINTLPASLPSEPGIVEQYNADNRRWADLVSNTYLTKFNISWGGIRNVMDMNAGYGGFAAALID LPYWVMNVVPVTEKDTLPIIFDRGMIGVYHDWCESFNTYPRTYDLVHASFIFKSLSERCDLVDVGLEIDRIVRPGGYFLAFETMESINSLTAILKSLHWS VKVHKAQYMVAAKGFWRPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40280			S-adenosyl-L-methionine-depend...		Lus10007520 [exp]	0	1
AT5G11710			ENTH/VHS family protein (.1)		Lus10007460 [exp]	3.5	0.8959
AT4G34490		ATCAP1	cyclase associated protein 1 (...		Lus10026338 [exp]	3.5	0.9023
AT1G05170			Galactosyltransferase family p...		Lus10015107 [exp]	10.1	0.8515
AT5G18280		ATAPY2	apyrase 2 (.1.2)		Lus10003270 [exp]	13.5	0.8902
AT1G21660			Chaperone DnaJ-domain superfam...		Lus10028548 [exp]	14.1	0.8470
AT2G45120	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10000679 [exp]	14.7	0.8669
AT1G14020			O-fucosyltransferase family pr...		Lus10026624 [exp]	18.5	0.8708
AT5G52560		ATUSP	UDP-sugar pyrophosphorylase (....		Lus10028658 [exp]	19.7	0.8415
AT1G03900		ABCI18, ATNAP4	ATP-binding cassette I18, non-...		Lus10003544 [exp]	19.7	0.8787
AT1G21830			unknown protein		Lus10018177 [exp]	20.4	0.8642

Compare expression of checked genes

Lus10007520 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.