Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40290 535 / 0 Eukaryotic translation initiation factor 2 subunit 1 (.1.2.3) AT5G05470 494 / 3e-177 ATEIF2-A2, EIF2ALPHA ,EIF2 ALPHA eukaryotic translation initiation factor 2 alpha subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017435 [exp] 613 / 0 AT2G40290 559 / 0.0 Eukaryotic translation initiation factor 2 subunit 1 (.1.2.3) Lus10024444 [exp] 238 / 3e-78 AT2G40290 211 / 1e-67 Eukaryotic translation initiation factor 2 subunit 1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G184900 [exp] 543 / 0 AT2G40290 551 / 0.0 Eukaryotic translation initiation factor 2 subunit 1 (.1.2.3) Potri.008G072500 [exp] 543 / 0 AT2G40290 547 / 0.0 Eukaryotic translation initiation factor 2 subunit 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07541 [flax] [poplar] EIF_2_alpha Eukaryotic translation initiation factor 2 alpha subunit CL0021 [flax] [poplar] OB PF00575 [flax] [poplar] S1 S1 RNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10007521 pacid=23176495 polypeptide=Lus10007521 locus=Lus10007521.g ID=Lus10007521.BGIv1.0 annot-version=v1.0 ATGGCGACGAACAACCTCGAGTGTCGGATGTACGAAGCGCGGTACCCTGAAGTTGACATGGCGGTGATGATTCAGGTGAAGAACATCGCCGACATGGGGG CTTACGTCTCCTTGCTCGAGTACAACAACATTGAAGGCATGATCCTGTTCTCCGAGCTCTCCCGCCGCCGGATTCGTAGTGTCAGCAGCTTGATTAAGGT CGGCCGTATCGAGCCAGTGATGGTGCTGAGAGTTGACAAGGAGAAGGGGTATATTGACTTGAGTAAGAGGAGGGTTAGTGAGGAGGATATTCAGGCCTGT GAGGAGAGGTACAACAAGAGTAAGCTCGTTCACTCCATCATGCGTCATGTTGCTGAGACGCTTGAACTTGATTTGGAGGATCTGTACATCCATATTGGCT GGCCTCTTTACCGTAAATATGGGCATGCTTTTGAGGCATTCAAAATCATCGTCACTGACCCTGACACGGTCCTAAGCTCCCTCACCCGCGAAGTCAAGGA AGTTGGTCCTGATGGACAAGAGGTAACCAAGGTAGTGCCAGCTGTCACAGAGGAAGTTAAAGACTCTCTGGTGAAGAACATAAAGAGGAGAATGACTCCC CAGCCTTTGAAGATTCGAGCCGACATCGAAATGAAGTGCTTCGCTTTTGATGGAGTCCTTCATATTAAGGATGCCATGAGGAAGGCCGAGGCTACTGGTA ACAAAGACTGCCCAGTGAAGATTAAGCTAGTTGCTCCTCCACTCTATGTGCTCACTACACAAACACTAGACAAGGATCAAGGAATATCGATCCTTACCAA GGCAATCACAGCATGCAGCGAATCAATCGAAGAGAAGAAGGGAAAACTTGTAGTAAAAGAGGCTCCTAGAGCAGTGAGCGAACGTGACGACAAGTTGCTT GCTGAGCACATGGCGAAGCTGAGAACCGAGAATGAGGAGATGAGCGGAGATGAAGACAGCGAGGATGAAGATACCGGTATGGGAGATGTCGATGTCGAAA ATGCTGGCCCGGGAATCACAGAGTGA
AA sequence Show only first row Show all	>Lus10007521 pacid=23176495 polypeptide=Lus10007521 locus=Lus10007521.g ID=Lus10007521.BGIv1.0 annot-version=v1.0 MATNNLECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQAC EERYNKSKLVHSIMRHVAETLELDLEDLYIHIGWPLYRKYGHAFEAFKIIVTDPDTVLSSLTREVKEVGPDGQEVTKVVPAVTEEVKDSLVKNIKRRMTP QPLKIRADIEMKCFAFDGVLHIKDAMRKAEATGNKDCPVKIKLVAPPLYVLTTQTLDKDQGISILTKAITACSESIEEKKGKLVVKEAPRAVSERDDKLL AEHMAKLRTENEEMSGDEDSEDEDTGMGDVDVENAGPGITE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40290			Eukaryotic translation initiat...		Lus10007521 [exp]	0	1
AT1G20300			Pentatricopeptide repeat (PPR)...		Lus10037533 [exp]	1.0	0.9199
AT3G21400			unknown protein		Lus10006520 [exp]	3.7	0.8709
AT3G49910			Translation protein SH3-like f...		Lus10011540 [exp]	3.7	0.9086
AT3G49910			Translation protein SH3-like f...		Lus10028537 [exp]	7.5	0.8982
AT2G47110		UBQ6	ubiquitin 6 (.1.2)		Lus10030894 [exp]	9.5	0.8614
AT3G57150		ATNAP57, ATCBF5...	homologue of NAP57 (.1)		Lus10035418 [exp]	10.1	0.8756
AT5G09500			Ribosomal protein S19 family p...		Lus10024865 [exp]	12.0	0.8882
AT5G48760			Ribosomal protein L13 family p...		Lus10007137 [exp]	12.0	0.8931
AT1G80270		PPR596	PENTATRICOPEPTIDE REPEAT 596 (...		Lus10012112 [exp]	12.4	0.8610
AT2G15000			unknown protein		Lus10025365 [exp]	13.7	0.8413

Compare expression of checked genes

Lus10007521 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.