Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58280 177 / 2e-52 B3 AP2/B3-like transcriptional factor family protein (.1) AT3G19184 120 / 4e-31 B3 AP2/B3-like transcriptional factor family protein (.1) AT5G42700 115 / 6e-30 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G33280 54 / 1e-07 B3 REM16 AP2/B3-like transcriptional factor family protein (.1) AT4G31640 48 / 7e-06 B3 REM5 transcriptional factor B3 family protein (.1) AT1G49480 47 / 1e-05 B3 REM19, RTV1 related to vernalization1 1 (.1) AT4G31690 47 / 2e-05 B3 REM9 Transcriptional factor B3 family protein (.1) AT3G18990 45 / 6e-05 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) AT5G18000 45 / 8e-05 B3 VDD VERDANDI (.1) AT4G31680 43 / 0.0004 B3 REM8 Transcriptional factor B3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017434 [exp] 580 / 0 AT5G58280 205 / 7e-64 AP2/B3-like transcriptional factor family protein (.1) Lus10014044 [exp] 128 / 2e-33 AT3G19184 250 / 2e-82 AP2/B3-like transcriptional factor family protein (.1) Lus10019872 [exp] 129 / 5e-33 AT3G19184 117 / 2e-30 AP2/B3-like transcriptional factor family protein (.1) Lus10019873 [exp] 128 / 2e-32 AT5G42700 121 / 6e-32 AP2/B3-like transcriptional factor family protein (.1) Lus10019870 [exp] 124 / 2e-31 AT3G19184 253 / 8e-83 AP2/B3-like transcriptional factor family protein (.1) Lus10019871 [exp] 121 / 4e-30 AT3G19184 116 / 2e-29 AP2/B3-like transcriptional factor family protein (.1) Lus10035416 [exp] 118 / 4e-29 AT3G19184 129 / 2e-34 AP2/B3-like transcriptional factor family protein (.1) Lus10009764 [exp] 112 / 1e-28 AT5G42700 229 / 3e-76 AP2/B3-like transcriptional factor family protein (.1) Lus10032098 [exp] 118 / 2e-28 AT3G19184 130 / 7e-34 AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G103200 [exp] 140 / 1e-38 AT3G19184 206 / 8e-66 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103100 [exp] 139 / 4e-38 AT3G19184 232 / 5e-76 AP2/B3-like transcriptional factor family protein (.1) Potri.014G031700 [exp] 123 / 2e-32 AT5G42700 180 / 4e-57 AP2/B3-like transcriptional factor family protein (.1) Potri.014G031600 [exp] 120 / 1e-31 AT5G42700 156 / 1e-47 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103300 [exp] 122 / 2e-30 AT3G19184 128 / 9e-34 AP2/B3-like transcriptional factor family protein (.1) Potri.007G042500 [exp] 122 / 2e-30 AT3G19184 134 / 6e-36 AP2/B3-like transcriptional factor family protein (.1) Potri.018G140700 [exp] 116 / 2e-28 AT3G19184 140 / 2e-38 AP2/B3-like transcriptional factor family protein (.1) Potri.005G137600 [exp] 116 / 3e-28 AT3G19184 135 / 2e-36 AP2/B3-like transcriptional factor family protein (.1) Potri.004G141800 [exp] 115 / 8e-28 AT3G19184 119 / 3e-30 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103400 [exp] 113 / 3e-27 AT3G19184 120 / 5e-31 AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10007522 pacid=23176500 polypeptide=Lus10007522 locus=Lus10007522.g ID=Lus10007522.BGIv1.0 annot-version=v1.0 ATGGCGGCGATGGTATCGGAAGCTGCCACCGACAACTCTTACGAGGAGGCTCGCAAACTGCGTCTCGAGGAGAATCGGAAGCGCTTTCAGGATTTGGGGA TTTCCGATCTCTCCAGATCTCTTTCCAAAGTCTCCAATTCCCCCACTGCCGCCTCAAAGCAGCGTCAACCGAAACCAAGGTCGAAACCAGGAACTGCGTT AGATGAGTTTCAGCCACGGCGATCATCTCGTCCGCGAAATCACATTACTTCCTACGTCGAGGATGTGTGTATAATAAACTCTCGGATTCATCAGTTTTCT TATCATTGTTTTTTTTGTTCTCCCAAGATCGATCTCAATCTTCGTTCTTTGCAGTTTCAAGCGGACTTGGATCTTTCAGCTAAGCGCCGTCGTAGCAATG GCTCAAGGTTGAATTCATCGTGGACAAGCTATATAGCAAGGCCACTTGAAGAAGTCGTACTTGCTTCATTCGAAGAACGCGAACGTGCTCGTAAAGCAGC TGAACGTTTCGAACAAACTTTGCCCTCCGATCATCCGGTGTTCGTCAAATCAATGGTTCGGTCTCATGTTTACAGCTGCTTTTGGTTGGGACTTCCATCT CAGTTCTGCGCAAGCCACCTTCCGAAACAGGACTCAGATATAATACTCGAGGATGAGAATGGCTCGATATATGATACCAAGTACCTCAGCGGAAGGGCTG GTCTTAGCGGTGGCTGGAGGGCGTTTGCGTTGGAACGCAAACTGAACGACGGTGATGCTGTAGTGTTCCAATTGGTAGAGCCAGAAAGGTTTAAGGTATA CATTTTCAGAACAACATCAGATTCCGACAGAAAGCCTAATGCAGATGCTGTGGTTTGCAAAGAATCGAATGGCGATCAACAGTCAAATAAGAGACGGAAA GTAAAGGAAGATAATGATGATAATGCAGCTGACGAAGAAGAAGGAGCCGAGCCAACACCTAGAAGACTTACTGGTAGAAAAACAGCTGCTAAAAATCAAA TGAAGAAGAACGGCTTGGCTCCAATGGAGGAAGAAGATGTCATAAAGAAAGGTGAGACATGCAGAAGAAAGAGTGGAAGAAGATCAACTGTGGCATCAGA TGAAACGAACGAGAAAAGTACGACTCTCGAAGGAGGACAAACTGAAGAACATGCTTTAGTTCCTGAAGAACAGAAGGGGAAACCGAAACCAGTTACAGAC GAGATGTCCATGGAGGAAGAAGAAGCAGTTGGTGTGAAGGAAGCGAAACCTACTGCTATCAAGGCAAGGAAAAAGGCAGCTCCTAGGCTATTTCGAAGGA AAGTGTATTAA
AA sequence Show only first row Show all	>Lus10007522 pacid=23176500 polypeptide=Lus10007522 locus=Lus10007522.g ID=Lus10007522.BGIv1.0 annot-version=v1.0 MAAMVSEAATDNSYEEARKLRLEENRKRFQDLGISDLSRSLSKVSNSPTAASKQRQPKPRSKPGTALDEFQPRRSSRPRNHITSYVEDVCIINSRIHQFS YHCFFCSPKIDLNLRSLQFQADLDLSAKRRRSNGSRLNSSWTSYIARPLEEVVLASFEERERARKAAERFEQTLPSDHPVFVKSMVRSHVYSCFWLGLPS QFCASHLPKQDSDIILEDENGSIYDTKYLSGRAGLSGGWRAFALERKLNDGDAVVFQLVEPERFKVYIFRTTSDSDRKPNADAVVCKESNGDQQSNKRRK VKEDNDDNAADEEEGAEPTPRRLTGRKTAAKNQMKKNGLAPMEEEDVIKKGETCRRKSGRRSTVASDETNEKSTTLEGGQTEEHALVPEEQKGKPKPVTD EMSMEEEEAVGVKEAKPTAIKARKKAAPRLFRRKVY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58280	B3		AP2/B3-like transcriptional fa...		Lus10007522 [exp]	0	1
AT2G23530			Zinc-finger domain of monoamin...		Lus10000845 [exp]	1.0	0.9799
AT2G07170			ARM repeat superfamily protein...		Lus10008545 [exp]	2.0	0.9610
AT4G33400			Vacuolar import/degradation, V...		Lus10042656 [exp]	2.8	0.9749
AT1G76310		CYCB2;4	CYCLIN B2;4 (.1)		Lus10013226 [exp]	3.0	0.9635
AT1G18600		ATRBL12	ARABIDOPSIS RHOMBOID-LIKE PROT...		Lus10018399 [exp]	3.2	0.9496
AT3G27330			zinc finger (C3HC4-type RING f...		Lus10032119 [exp]	3.9	0.9446
AT4G22860			Cell cycle regulated microtubu...		Lus10006677 [exp]	4.9	0.9571
AT5G42330			unknown protein		Lus10013229 [exp]	5.7	0.9544
AT2G23530			Zinc-finger domain of monoamin...		Lus10019647 [exp]	6.2	0.9476
AT1G76310		CYCB2;4	CYCLIN B2;4 (.1)		Lus10030746 [exp]	8.5	0.9538

Compare expression of checked genes

Lus10007522 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.