Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40300 332 / 8e-116 ATFER4 ferritin 4 (.1) AT3G11050 323 / 2e-112 ATFER2 ferritin 2 (.1) AT5G01600 307 / 4e-106 ATFER1 ARABIDOPSIS THALIANA FERRETIN 1, ferretin 1 (.1) AT3G56090 302 / 6e-104 ATFER3 ferritin 3 (.1) AT3G61010 84 / 3e-18 Ferritin/ribonucleotide reductase-like family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017433 [exp] 454 / 3e-164 AT2G40300 366 / 3e-129 ferritin 4 (.1) Lus10002865 [exp] 306 / 1e-105 AT5G01600 331 / 2e-115 ARABIDOPSIS THALIANA FERRETIN 1, ferretin 1 (.1) Lus10012233 [exp] 301 / 8e-104 AT5G01600 333 / 4e-116 ARABIDOPSIS THALIANA FERRETIN 1, ferretin 1 (.1) Lus10022673 [exp] 292 / 5e-100 AT5G01600 339 / 1e-118 ARABIDOPSIS THALIANA FERRETIN 1, ferretin 1 (.1) Lus10012499 [exp] 291 / 1e-99 AT5G01600 338 / 3e-118 ARABIDOPSIS THALIANA FERRETIN 1, ferretin 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G184500 [exp] 370 / 1e-130 AT3G11050 311 / 2e-107 ferritin 2 (.1) Potri.008G072700 [exp] 346 / 2e-121 AT3G11050 330 / 9e-115 ferritin 2 (.1) Potri.006G103900 [exp] 305 / 3e-105 AT5G01600 262 / 3e-88 ARABIDOPSIS THALIANA FERRETIN 1, ferretin 1 (.1) Potri.016G124700 [exp] 303 / 8e-105 AT5G01600 294 / 8e-101 ARABIDOPSIS THALIANA FERRETIN 1, ferretin 1 (.1) Potri.016G124900 [exp] 294 / 4e-101 AT5G01600 264 / 4e-89 ARABIDOPSIS THALIANA FERRETIN 1, ferretin 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0044 [flax] [poplar] Ferritin PF00210 [flax] [poplar] Ferritin Ferritin-like domain
Representative CDS sequence Show only first row Show all	>Lus10007523 pacid=23176471 polypeptide=Lus10007523 locus=Lus10007523.g ID=Lus10007523.BGIv1.0 annot-version=v1.0 ATGGCGCTCAAGATTTCGCCGGCGTTCTCTTCCGTCCTGGCCTCCCGGGACAACACTCTGTTTCCTTCTGTTCCTTCGTCGTCGGTTCTTCGCCTGAAAA CCTGCTCCGGATCGTCGTCGGCGGCAATGGCTTGCAAGGCGGTGAATGACAAACCGCTAACTGGCGTTGTGTTTCAGCCTTTTGAAGAGGTGAAGAAGGA GCTCGATCTGGTTCCCACTGCCTCGAACGCGTCTCTCGCTAGGCAGAAGTTTGTTGATGAGTGTGAAGCTGCCATCAACGAACAGATCAATGTGGAGTAC AATGTGTCGTATGTCTACCATGCCATGCATGCATACTTTGACAGAGACAATGTTGCTCTCAAGGGCCTTGCCAAGTTCTTCAAGGAGTCAAGCGCTGAAG AGAGGGAACATGCTGAGAAGCTGATGGAGTACCAGAACAAAAGGGGTGGGAAAGTGAAGCTTCAGTCCATAGTATCGCCACTCTCTGAATTTGACCATGC TGAGAAAGGCGACGCTCTGTACGCAATGGAACTTGCCCTGTCTCTGGAGAAACTGACAAACGAGAAGCTCTTGAATTTGCATAGCGTAGCTGACAAGAAC AACGATGTGCAATTGACTGATTTTGTTGAAGGCGAGTTCTTGGCTGAGCAGGTTGATGCGATAAAGAAGATCTCAGAATACGTTGCCCAGCTCAGAAGAG TCGGAAAGGGACACGGTGTATGGCATTTCGACCAGACCCTTCTGAACTAG
AA sequence Show only first row Show all	>Lus10007523 pacid=23176471 polypeptide=Lus10007523 locus=Lus10007523.g ID=Lus10007523.BGIv1.0 annot-version=v1.0 MALKISPAFSSVLASRDNTLFPSVPSSSVLRLKTCSGSSSAAMACKAVNDKPLTGVVFQPFEEVKKELDLVPTASNASLARQKFVDECEAAINEQINVEY NVSYVYHAMHAYFDRDNVALKGLAKFFKESSAEEREHAEKLMEYQNKRGGKVKLQSIVSPLSEFDHAEKGDALYAMELALSLEKLTNEKLLNLHSVADKN NDVQLTDFVEGEFLAEQVDAIKKISEYVAQLRRVGKGHGVWHFDQTLLN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40300		ATFER4	ferritin 4 (.1)		Lus10007523 [exp]	0	1
AT2G40300		ATFER4	ferritin 4 (.1)		Lus10017433 [exp]	1.4	0.8070
AT4G30410			sequence-specific DNA binding ...		Lus10015500 [exp]	2.4	0.8000
AT3G24000			Tetratricopeptide repeat (TPR)...		Lus10002561 [exp]	2.8	0.7905
AT3G09210		PTAC13	plastid transcriptionally acti...		Lus10027750 [exp]	9.7	0.8592
					Lus10039851 [exp]	11.3	0.7605
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10010066 [exp]	14.1	0.7803
AT1G36390			Co-chaperone GrpE family prote...		Lus10024760 [exp]	17.3	0.7794
AT5G59600			Tetratricopeptide repeat (TPR)...		Lus10040779 [exp]	17.7	0.6821
AT4G03400		GH3-10, DFL2	DWARF IN LIGHT 2, Auxin-respon...		Lus10018565 [exp]	20.4	0.7667
AT3G15395			unknown protein		Lus10027849 [exp]	21.4	0.7313

Compare expression of checked genes

Lus10007523 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.