Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05460 708 / 0 AtENGase85A Endo-beta-N-acetyglucosaminidase 85A, Glycosyl hydrolase family 85 (.1) AT3G11040 689 / 0 AtENGase85B Endo-beta-N-acetyglucosaminidase 85B, Glycosyl hydrolase family 85 (.1) AT3G61010 161 / 5e-43 Ferritin/ribonucleotide reductase-like family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017430 [exp] 1304 / 0 AT5G05460 715 / 0.0 Endo-beta-N-acetyglucosaminidase 85A, Glycosyl hydrolase family 85 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G184300 [exp] 823 / 0 AT5G05460 727 / 0.0 Endo-beta-N-acetyglucosaminidase 85A, Glycosyl hydrolase family 85 (.1) Potri.010G184200 [exp] 807 / 0 AT5G05460 765 / 0.0 Endo-beta-N-acetyglucosaminidase 85A, Glycosyl hydrolase family 85 (.1) Potri.008G073001 [exp] 157 / 3e-44 AT3G11040 171 / 1e-49 Endo-beta-N-acetyglucosaminidase 85B, Glycosyl hydrolase family 85 (.1) Potri.008G072901 [exp] 0 / 1 AT5G05460 0 / 1 Endo-beta-N-acetyglucosaminidase 85A, Glycosyl hydrolase family 85 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF03644 [flax] [poplar] Glyco_hydro_85 Glycosyl hydrolase family 85
Representative CDS sequence Show only first row Show all	>Lus10007526 pacid=23176490 polypeptide=Lus10007526 locus=Lus10007526.g ID=Lus10007526.BGIv1.0 annot-version=v1.0 ATGAATGGCTGTTCTAGCTCTTTGCGTTGGGCTCACTGTAAAATTGCTGAATGGTGGTGTCTCTTTAAGCAAGTCAAGGTCTCTTCTTTGTTCAAATCAA TCAATCAATCACCTGAGTATATGCTCGCCCGTCTCCTCCGACTCGTAATAAGCCGCGAAACTCTAATCTCAGTGTACAACCTCCTCAAGTTCCTCCGTAC CATAACCAAGTCAATCCTTTCTCGGATCTTCTCCATGGCGAAATCGGAGCAGCAGCAGCAGGATGCGGAACCCGCTTTCGACCCGTTACAGCCATCAATT CCAATCTCATACCCACTCAAGACACTCGAAGAGCTGGAGTCTCGAGCTTACTTCGACTCGTTTCACTACCCGTTCAACAAATCATCCGTCCCTCTTGAAT CTCCTTTGCCGAATAGACCAAGGATGCTGGTGTGCCATGATATGCAAGGTGGGTATGTGGATGATAAGTGGGTTCAAGGAGGGAGTAATCCGGATGCTTA TTCCATCTGGCATTGGTATTTGATGGATGTGTGTGTTTATTTTTCACATTCTTTGGTCACTCTGCCTCCTCCTTGCTGGACTAATGTAGCTCATAGACAT GGAGTAAAGGTGTTGGGGACGTTCATCACAGAATGGGACGAAGGTAGAACAATAAGCAACAAATTGCTTGAAACAGAGGACTCTGCTCGACTGTACGCTG AACGTTTGGCTGAACTTGCTGCTTCTTTAGGCTTCGATGGATGGCTGATCAACATGGAGGTCAAATTGGATCCGAGTCAGATTCCGAATCTGAAGGAATT CGTTCGCCATCTAACTTGGACTATGCATTCGTTGGTGCCTGGATCAATGGTGATATGGTATGACAGTGTTACAATTGATGGAGAGCTTAAATGGCAAGAT CAGTTGAATGGAAAGAACAAAGCTTTCTTTGATATATGTGATGGCATATTCGTCAATTACACATGGAAGAAGGATTATCCTAAGCTTTCAGCTGAAGTAG CCGGCGACAGAAAGTTCGATGTCTACATGGGAATCGATGTGTTCGGGAGGAACACATACGGTGGTGGAATGTGGGATACGAACGTTGCACTCGATGTGAT CAAGAGTAACGAAGTTTCGGCTGCCATATTTGCACCGGGATGGGTGTACGAGACCAAGCAGCCACCTGATTTTCGGACTGCTCAAAACCGGTGGTGGAAT CTAGTCGAGAATTCGTGGGGAGTTGTTCAGAAGTACCCTAGATCTCTACCATTCTATTCTAGTTTTGATCAGGGTGTTGGGTATCATATATCGGTTGATG GAGAGCAAATAACAGATGCTACTTGGAATAACATGTCTTGTCAAGGATTTCAGCCTTTACTTACATATGCTGACGACTCGAAACCAGATGCTATACAAGT ACTCGTCGAGGAACCATCTTACAATGGCGGAGGAAACGTTACATTCAAAGGGACCCTCCAAGACAATGCTTATTTCGAAACAAGGCTGTTCCTTGGAGAG CATCTTTTGGGTTGCGAGCCACTCCAGGTTTTGTATTCTGTAAAATCGGAGAAGGATGATTCACAGCTGGGCCTATCACTTCATTTCGTCTCTCCCCTGA ACAACAAGGAATCAGTAATCCTTATCGCACCATGGGAAACCGAAGAGCCCTCTCGAAAATTCAACAAAGCAATCGTTCCACGACTGGTGACCGACTCGGA AACCCAAACCGGTCGATGGATGGTATACAAGAGCAAGGTCGTAATGAACGGACACATACTGAGGGAGATTCGCGCTGTATGCCACAGGCTAAATGGAGGA AGGCCTGAATATTCTGCTGTGCTTGGCCATATTCTTATGAAGAGTTCCGATCAGAACATGAATCTCCCTCCCGCTAATTTGTGGGAAGTTACAGCCGAGT TTGTCCGGTGGAGTACTGATGTATCGAGTGCGGTTAGCTTGAAGATTAAGTGGAAATTGAAAGAAGGAATCACTACATTTCGGATTCCAACGTACAATGT CTACTACGTGGCGAAACAAGCAGAACAGCGCGACGGAGATTCTAACTATCTTGGAGTTGCAGCAGTTGAAGCGTTCTATGTTTTGGATTTGGCTGTTCGG TCTGATGTCTGCAGTCTCAAGTTCATTGTTCAAGCTTGTAGTGCTGATGGTGCTTCACTAAAGCTCGATGATTGCCCTTACTTTGAACTTGAGGTTGAAC ACAAGTAA
AA sequence Show only first row Show all	>Lus10007526 pacid=23176490 polypeptide=Lus10007526 locus=Lus10007526.g ID=Lus10007526.BGIv1.0 annot-version=v1.0 MNGCSSSLRWAHCKIAEWWCLFKQVKVSSLFKSINQSPEYMLARLLRLVISRETLISVYNLLKFLRTITKSILSRIFSMAKSEQQQQDAEPAFDPLQPSI PISYPLKTLEELESRAYFDSFHYPFNKSSVPLESPLPNRPRMLVCHDMQGGYVDDKWVQGGSNPDAYSIWHWYLMDVCVYFSHSLVTLPPPCWTNVAHRH GVKVLGTFITEWDEGRTISNKLLETEDSARLYAERLAELAASLGFDGWLINMEVKLDPSQIPNLKEFVRHLTWTMHSLVPGSMVIWYDSVTIDGELKWQD QLNGKNKAFFDICDGIFVNYTWKKDYPKLSAEVAGDRKFDVYMGIDVFGRNTYGGGMWDTNVALDVIKSNEVSAAIFAPGWVYETKQPPDFRTAQNRWWN LVENSWGVVQKYPRSLPFYSSFDQGVGYHISVDGEQITDATWNNMSCQGFQPLLTYADDSKPDAIQVLVEEPSYNGGGNVTFKGTLQDNAYFETRLFLGE HLLGCEPLQVLYSVKSEKDDSQLGLSLHFVSPLNNKESVILIAPWETEEPSRKFNKAIVPRLVTDSETQTGRWMVYKSKVVMNGHILREIRAVCHRLNGG RPEYSAVLGHILMKSSDQNMNLPPANLWEVTAEFVRWSTDVSSAVSLKIKWKLKEGITTFRIPTYNVYYVAKQAEQRDGDSNYLGVAAVEAFYVLDLAVR SDVCSLKFIVQACSADGASLKLDDCPYFELEVEHK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11040		AtENGase85B	Endo-beta-N-acetyglucosaminida...		Lus10007526 [exp]	0	1
AT1G77330			2-oxoglutarate (2OG) and Fe(II...		Lus10028678 [exp]	4.5	0.9123
AT3G53990			Adenine nucleotide alpha hydro...		Lus10022602 [exp]	5.2	0.9269
AT3G14590		NTMCTYPE6.2 ,NT...	Calcium-dependent lipid-bindin...		Lus10042475 [exp]	5.5	0.9110
AT5G46060			Protein of unknown function, D...		Lus10013944 [exp]	8.0	0.8948
AT5G25140		CYP71B13	"cytochrome P450, family 71, s...		Lus10018263 [exp]	10.9	0.9205
AT2G45630			D-isomer specific 2-hydroxyaci...		Lus10036537 [exp]	14.6	0.9161
AT3G53990			Adenine nucleotide alpha hydro...		Lus10021501 [exp]	17.0	0.9040
AT5G66040		STR16	sulfurtransferase protein 16 (...		Lus10021227 [exp]	17.7	0.8976
AT1G56140			Leucine-rich repeat transmembr...		Lus10020688 [exp]	18.3	0.8541
AT4G28390		ATAAC3, AAC3	ADP/ATP carrier 3 (.1)		Lus10018611 [exp]	18.8	0.8846

Compare expression of checked genes

Lus10007526 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.