Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40316 249 / 2e-82 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017429 [exp] 432 / 9e-154 AT2G40316 289 / 9e-98 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G073200 [exp] 308 / 9e-106 AT2G40316 334 / 7e-116 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0226 [flax] [poplar] M6PR PF09451 [flax] [poplar] ATG27 Autophagy-related protein 27
Representative CDS sequence Show only first row Show all	>Lus10007527 pacid=23176492 polypeptide=Lus10007527 locus=Lus10007527.g ID=Lus10007527.BGIv1.0 annot-version=v1.0 ATGGCGCATCGAATCGATGTTTCGAAATGTCAGCTAATCTGGCTTCCATCATTACTCCTTCTCGCGTCGCTCCACTCCGTCTCAGCCGCTCTCTGCGAGC TCAGTCATTCCGACGGCCGCCAGATTTTCAACTTCAGCTTGACTACTCCTCTACCTGGGTTCCCGCATGGGATCCTCAGCGAAGACGGGTTCTACAATGT TGCCAACAATGAGAGCGTGCTCTGGTTTCAGCTCTGTGATAGGATGATCTTTAATCATGGCCGGCCTAGATGTTTTGGTTGCCAGGGTTGTGGCGGGACA TCACACTGTGGAACTGGATGTACTGCACTTGTAGCGAATAATATAGATGGTTATGACGTATGCAGCACTCTTGGCTCGATTTCGAGCACTGTTACTGAGA TCATGGATGATGAGAATCCACAGAACGGTGTCAATGTTAAGATCTCAAGTCTTGACAATAAGGATAATTGCTCACTTACTGTCTCTGTCATCTGTGATTT AGCTGGAATCAAAGGCCCCAGTGCACTGCGGAAGTTAGGAACATGCACATATGCTGCAGTTCTACAGCATCCAGCTGGCTGCGCTACAGTTGTATCTGCT CGTGGGAAAGGATTGGGATGGTTTTCCATATTGATAATAGTTATCCTGTCTCTTTTCGGAGCTTATATGATAGCTGGTGCAGTTTATCGGCATTTCTTCC TTGGGATCAATGGATTAGATGCGATCCCGAACTTGGATATCTGGGTCAGTTTACCTCTCAGAATGCAGGCCTATTTAGCTTCTTTGGTACGGAGATTCAA AGGACCTACCGAGACCTACCGAAGTTCCTATTCTCCTGTCAACTTTTAG
AA sequence Show only first row Show all	>Lus10007527 pacid=23176492 polypeptide=Lus10007527 locus=Lus10007527.g ID=Lus10007527.BGIv1.0 annot-version=v1.0 MAHRIDVSKCQLIWLPSLLLLASLHSVSAALCELSHSDGRQIFNFSLTTPLPGFPHGILSEDGFYNVANNESVLWFQLCDRMIFNHGRPRCFGCQGCGGT SHCGTGCTALVANNIDGYDVCSTLGSISSTVTEIMDDENPQNGVNVKISSLDNKDNCSLTVSVICDLAGIKGPSALRKLGTCTYAAVLQHPAGCATVVSA RGKGLGWFSILIIVILSLFGAYMIAGAVYRHFFLGINGLDAIPNLDIWVSLPLRMQAYLASLVRRFKGPTETYRSSYSPVNF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40316			unknown protein		Lus10007527 [exp]	0	1
AT1G10180			unknown protein		Lus10018297 [exp]	6.5	0.8898
AT5G58760		DDB2	damaged DNA binding 2 (.1)		Lus10036179 [exp]	11.6	0.8558
AT3G61920			unknown protein		Lus10032411 [exp]	11.7	0.8976
AT2G29570		ATPCNA2, PCNA2	A. THALIANA PROLIFERATING CELL...		Lus10001197 [exp]	15.7	0.8898
AT4G22010		SKS4	SKU5 similar 4 (.1)		Lus10015545 [exp]	17.8	0.8921
AT4G36920	AP2_ERF	FL1, FLO2, AP2	FLORAL MUTANT 2, FLOWER 1, APE...		Lus10026477 [exp]	21.4	0.8884
AT4G01040			Glycosyl hydrolase superfamily...		Lus10029447 [exp]	22.0	0.8398
AT2G01830		CRE1, AHK4, WOL...	WOODEN LEG 1, WOODEN LEG, CYTO...		Lus10003686 [exp]	27.9	0.8701
AT1G80530			Major facilitator superfamily ...		Lus10028803 [exp]	35.1	0.8856
AT1G80530			Major facilitator superfamily ...		Lus10017480 [exp]	40.8	0.8878

Compare expression of checked genes

Lus10007527 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.