Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40320 346 / 2e-118 TBL33 TRICHOME BIREFRINGENCE-LIKE 33 (.1) AT3G11030 286 / 9e-95 TBL32 TRICHOME BIREFRINGENCE-LIKE 32 (.1) AT2G38320 213 / 2e-66 TBL34 TRICHOME BIREFRINGENCE-LIKE 34 (.1) AT3G55990 214 / 4e-66 TBL29, ESK1 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) AT2G40150 212 / 5e-66 TBL28 TRICHOME BIREFRINGENCE-LIKE 28 (.1) AT5G01620 201 / 2e-61 TBL35 TRICHOME BIREFRINGENCE-LIKE 35 (.1.2.3) AT1G73140 184 / 2e-55 TBL31 Plant protein of unknown function (DUF828) (.1) AT5G01360 174 / 9e-53 TBL3 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT2G40160 175 / 9e-52 TBL30 Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT1G78710 128 / 5e-35 TBL42 TRICHOME BIREFRINGENCE-LIKE 42 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017428 [exp] 389 / 1e-135 AT2G40320 540 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Lus10009839 [exp] 349 / 3e-119 AT2G40320 678 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Lus10040953 [exp] 342 / 1e-116 AT2G40320 675 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Lus10030396 [exp] 217 / 9e-68 AT3G55990 684 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Lus10022676 [exp] 211 / 9e-66 AT2G38320 545 / 0.0 TRICHOME BIREFRINGENCE-LIKE 34 (.1) Lus10028974 [exp] 211 / 2e-65 AT3G55990 678 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Lus10007497 [exp] 211 / 3e-65 AT3G55990 681 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Lus10014238 [exp] 205 / 1e-63 AT2G38320 495 / 2e-175 TRICHOME BIREFRINGENCE-LIKE 34 (.1) Lus10027813 [exp] 178 / 4e-53 AT5G01360 570 / 0.0 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G073300 [exp] 338 / 3e-115 AT2G40320 694 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Potri.010G184000 [exp] 334 / 1e-113 AT2G40320 692 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Potri.010G187600 [exp] 209 / 3e-64 AT3G55990 660 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.008G069900 [exp] 207 / 9e-64 AT3G55990 686 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.010G187500 [exp] 201 / 4e-62 AT3G55990 560 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.016G125600 [exp] 196 / 1e-59 AT5G01620 657 / 0.0 TRICHOME BIREFRINGENCE-LIKE 35 (.1.2.3) Potri.016G125500 [exp] 189 / 3e-57 AT2G38320 541 / 0.0 TRICHOME BIREFRINGENCE-LIKE 34 (.1) Potri.016G119100 [exp] 186 / 4e-56 AT5G01360 578 / 0.0 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Potri.001G376700 [exp] 185 / 7e-56 AT1G73140 640 / 0.0 Plant protein of unknown function (DUF828) (.1) Potri.008G070000 [exp] 184 / 3e-55 AT3G55990 530 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007528 pacid=23176478 polypeptide=Lus10007528 locus=Lus10007528.g ID=Lus10007528.BGIv1.0 annot-version=v1.0 ATGAAAACCCCAAAGTCCCCTGTTTCTTCTTCATCTTCATCTTCTTCTTCAACATCTTCTCTGAGAAAAGCACGGAAATTATCTCCGTACCTATTCACAC TGCTCGCATTCATCTTCTTCGTCGTCACACTCTACGGCGAGGACTTCCTCTGCCTCCTCTCGCGGCTCGATTACTCGATCGTCGAATCCTCCTCCTCTGT TATCTCGCCGCGGCCGGAGGAGGAGAAGATTCCGTTTGCGGTGGGGAAAACGACGCCGGAAGAGTGCGATTTGTTCAGCGGGAAGTGGGTGAGGGACGAA GTGACTCGGCCGCATTACAAGGAATCGGAATGCCCGTACATCCAGCCTCAGCTGACGTGTCAGGAGCATGGCCGGCCTGATGAGGATTACATGTTCTGGC GATGGCAGCCTAACGACTGCGATCTCCCCAGCTTCAACGCAACACTACTGCTAGAAAGCCTACGAAACAAACGAATGCTCTACGTCGGTGACTCCCTAAA CAGAGGCCAATACGTCTCAATGATCTGCCTCATCCACCGCCTAATCCCAAACGCCTCCGCCAAATCTTTCGAAACCACCGGCTCCTTAACAACTTTCACC GCCAAGGACTACAACGCCACGGTGGAATTCTACTGGGCCCCGTTCCTCCTCGAATCCAACTCGGACGACGCGGTCATCCACCGCGTGTCCGACCGGATCA TCCGGAAGGGGTCCATCAACAAGCACGGCCGCCACTGGCAGGGCGCCGACGCGGGCGGACGTGGTCGTGTTCAACACGTACCTGTGGTGGATGACCGGAG TGGATATGAAGGTTCTGCAAGGTGGAGGGTTCGATGA
AA sequence Show only first row Show all	>Lus10007528 pacid=23176478 polypeptide=Lus10007528 locus=Lus10007528.g ID=Lus10007528.BGIv1.0 annot-version=v1.0 MKTPKSPVSSSSSSSSSTSSLRKARKLSPYLFTLLAFIFFVVTLYGEDFLCLLSRLDYSIVESSSSVISPRPEEEKIPFAVGKTTPEECDLFSGKWVRDE VTRPHYKESECPYIQPQLTCQEHGRPDEDYMFWRWQPNDCDLPSFNATLLLESLRNKRMLYVGDSLNRGQYVSMICLIHRLIPNASAKSFETTGSLTTFT AKDYNATVEFYWAPFLLESNSDDAVIHRVSDRIIRKGSINKHGRHWQGADAGGRGRVQHVPVVDDRSGYEGSARWRVR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Lus10007528 [exp]	0	1
AT3G53520		ATUXS1, UXS1	UDP-glucuronic acid decarboxyl...		Lus10025293 [exp]	1.4	0.9611
AT5G34940		ATGUS3	glucuronidase 3 (.1.2.3)		Lus10008823 [exp]	3.7	0.9301
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Lus10017428 [exp]	5.5	0.9559
AT3G23690	bHLH	bHLH077	basic helix-loop-helix (bHLH) ...		Lus10021968 [exp]	6.0	0.9303
AT3G46440		UXS5	UDP-XYL synthase 5 (.1.2)		Lus10040847 [exp]	7.4	0.9456
AT2G28315			Nucleotide/sugar transporter f...		Lus10037397 [exp]	7.9	0.9575
AT3G27960			Tetratricopeptide repeat (TPR)...		Lus10022231 [exp]	8.2	0.9509
AT1G17270			O-fucosyltransferase family pr...		Lus10037461 [exp]	10.4	0.9454
AT4G37930		SHMT1, STM, SHM...	SERINE HYDROXYMETHYLTRANSFERAS...		Lus10042923 [exp]	10.7	0.9212
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Lus10007529 [exp]	12.2	0.9350

Compare expression of checked genes

Lus10007528 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.