Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40320 229 / 5e-75 TBL33 TRICHOME BIREFRINGENCE-LIKE 33 (.1) AT3G11030 215 / 2e-69 TBL32 TRICHOME BIREFRINGENCE-LIKE 32 (.1) AT1G73140 149 / 7e-44 TBL31 Plant protein of unknown function (DUF828) (.1) AT5G01620 146 / 9e-43 TBL35 TRICHOME BIREFRINGENCE-LIKE 35 (.1.2.3) AT5G01360 143 / 1e-41 TBL3 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT2G38320 130 / 4e-37 TBL34 TRICHOME BIREFRINGENCE-LIKE 34 (.1) AT3G55990 130 / 1e-36 TBL29, ESK1 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) AT3G12060 128 / 2e-35 TBL1 TRICHOME BIREFRINGENCE-LIKE 1, Plant protein of unknown function (DUF828) (.1) AT2G40150 125 / 6e-35 TBL28 TRICHOME BIREFRINGENCE-LIKE 28 (.1) AT2G40160 125 / 6e-35 TBL30 Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017428 [exp] 300 / 3e-103 AT2G40320 540 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Lus10009839 [exp] 249 / 2e-82 AT2G40320 678 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Lus10040953 [exp] 243 / 4e-80 AT2G40320 675 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Lus10042845 [exp] 149 / 1e-43 AT1G73140 559 / 0.0 Plant protein of unknown function (DUF828) (.1) Lus10012229 [exp] 144 / 4e-43 AT5G01620 509 / 0.0 TRICHOME BIREFRINGENCE-LIKE 35 (.1.2.3) Lus10002858 [exp] 143 / 2e-42 AT5G01620 510 / 0.0 TRICHOME BIREFRINGENCE-LIKE 35 (.1.2.3) Lus10028141 [exp] 144 / 4e-42 AT1G73140 563 / 0.0 Plant protein of unknown function (DUF828) (.1) Lus10027813 [exp] 144 / 6e-42 AT5G01360 570 / 0.0 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10005042 [exp] 142 / 2e-41 AT5G01360 560 / 0.0 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G073300 [exp] 263 / 4e-88 AT2G40320 694 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Potri.010G184000 [exp] 256 / 2e-85 AT2G40320 692 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Potri.016G125500 [exp] 153 / 2e-45 AT2G38320 541 / 0.0 TRICHOME BIREFRINGENCE-LIKE 34 (.1) Potri.016G125600 [exp] 149 / 7e-44 AT5G01620 657 / 0.0 TRICHOME BIREFRINGENCE-LIKE 35 (.1.2.3) Potri.001G376700 [exp] 143 / 9e-42 AT1G73140 640 / 0.0 Plant protein of unknown function (DUF828) (.1) Potri.016G119100 [exp] 143 / 1e-41 AT5G01360 578 / 0.0 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Potri.008G070000 [exp] 143 / 2e-41 AT3G55990 530 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.010G187600 [exp] 139 / 1e-39 AT3G55990 660 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.010G187300 [exp] 136 / 7e-39 AT3G55990 511 / 3e-179 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.008G069900 [exp] 135 / 2e-38 AT3G55990 686 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10007529 pacid=23176503 polypeptide=Lus10007529 locus=Lus10007529.g ID=Lus10007529.BGIv1.0 annot-version=v1.0 ATGGCGATGAGGAGTATGCTCCGGTGGGTTAGGAAGAATGTTGACCGGAAGAGTGGGCGGGTTTTTTTCACCGGCATGTCTCCTACTCATGGCAATAGCG CGGAATGGGGAGGGCAGGCCGGGGGCAACTGCTACAACGAAACATCACCGATCACGAACAACGCAACGTACTGGGGATCAGACAGCAAGAGGAGCATAAT GCAAGTGATCGGCGACGAGTTCCGAAAATCGAAATTCCCGGTGACGTTCCTCAACATAACGCAGCTCTCCAACTACAGGAAAGACGCCCACACTTCTATC TACAAGAAACAGTGGAGCCCACTAACGCCGGAGCAACTGGCCAACCCGGTCAGCTACTCTGACTGCGTCCACTGGTGCTTGCCTGGCCTACAAGATACAT GGAATGAGCTCCTTTTTGCCAAGCTTTTCTACCCCTGA
AA sequence Show only first row Show all	>Lus10007529 pacid=23176503 polypeptide=Lus10007529 locus=Lus10007529.g ID=Lus10007529.BGIv1.0 annot-version=v1.0 MAMRSMLRWVRKNVDRKSGRVFFTGMSPTHGNSAEWGGQAGGNCYNETSPITNNATYWGSDSKRSIMQVIGDEFRKSKFPVTFLNITQLSNYRKDAHTSI YKKQWSPLTPEQLANPVSYSDCVHWCLPGLQDTWNELLFAKLFYP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Lus10007529 [exp]	0	1
AT1G60810		ACLA-2	ATP-citrate lyase A-2 (.1)		Lus10030897 [exp]	2.4	0.9622
AT1G08560		KN, ATSYP111, S...	KNOLLE, syntaxin of plants 11...		Lus10042314 [exp]	3.7	0.9437
AT1G19170			Pectin lyase-like superfamily ...		Lus10039909 [exp]	7.2	0.9605
AT3G46440		UXS5	UDP-XYL synthase 5 (.1.2)		Lus10040847 [exp]	8.5	0.9445
AT2G28315			Nucleotide/sugar transporter f...		Lus10037397 [exp]	11.9	0.9484
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Lus10007528 [exp]	12.2	0.9350
AT5G50850		MAB1	MACCI-BOU, Transketolase famil...		Lus10032549 [exp]	13.8	0.8770
AT4G29460		PLA2-GAMMA	phospholipase A2 gamma, Phosph...		Lus10042892 [exp]	15.6	0.8607
AT4G27270			Quinone reductase family prote...		Lus10018401 [exp]	16.2	0.9233
AT1G68795		CLE12	CLAVATA3/ESR-RELATED 12 (.1)		Lus10041496 [exp]	17.2	0.9435

Compare expression of checked genes

Lus10007529 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.