Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56110 191 / 1e-61 PRA1.B1 prenylated RAB acceptor 1.B1 (.1.2) AT5G05380 181 / 1e-57 PRA1.B3 prenylated RAB acceptor 1.B3 (.1) AT2G38360 180 / 5e-57 PRA1.B4 prenylated RAB acceptor 1.B4 (.1) AT2G40380 157 / 4e-48 PRA1.B2 prenylated RAB acceptor 1.B2 (.1) AT5G01640 148 / 1e-44 PRA1.B5 prenylated RAB acceptor 1.B5 (.1) AT5G07110 120 / 1e-33 PRA1.B6 prenylated RAB acceptor 1.B6 (.1) AT1G55190 62 / 5e-12 PRA7, PRA1.F2 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) AT1G08770 58 / 4e-10 PRA1.E prenylated RAB acceptor 1.E (.1) AT3G13720 57 / 5e-10 PRA8, PRA1.F3 PRENYLATED RAB ACCEPTOR 1.F3, PRA1 (Prenylated rab acceptor) family protein (.1) AT1G17700 57 / 5e-10 PRA1.F1 prenylated RAB acceptor 1.F1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017425 [exp] 252 / 2e-85 AT2G38360 281 / 9e-97 prenylated RAB acceptor 1.B4 (.1) Lus10009842 [exp] 223 / 3e-74 AT2G38360 278 / 1e-95 prenylated RAB acceptor 1.B4 (.1) Lus10012224 [exp] 182 / 8e-58 AT2G38360 310 / 3e-108 prenylated RAB acceptor 1.B4 (.1) Lus10002853 [exp] 177 / 9e-56 AT2G38360 305 / 4e-106 prenylated RAB acceptor 1.B4 (.1) Lus10042246 [exp] 169 / 1e-52 AT2G38360 250 / 4e-84 prenylated RAB acceptor 1.B4 (.1) Lus10026404 [exp] 157 / 5e-48 AT2G38360 253 / 5e-86 prenylated RAB acceptor 1.B4 (.1) Lus10022680 [exp] 111 / 8e-31 AT2G38360 232 / 1e-78 prenylated RAB acceptor 1.B4 (.1) Lus10018774 [exp] 79 / 9e-18 AT1G08770 130 / 5e-38 prenylated RAB acceptor 1.E (.1) Lus10014234 [exp] 75 / 1e-16 AT2G38360 164 / 1e-51 prenylated RAB acceptor 1.B4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G074000 [exp] 199 / 1e-64 AT3G56110 213 / 2e-70 prenylated RAB acceptor 1.B1 (.1.2) Potri.008G074033 [exp] 199 / 1e-64 AT3G56110 213 / 2e-70 prenylated RAB acceptor 1.B1 (.1.2) Potri.010G183300 [exp] 192 / 5e-62 AT3G56110 239 / 9e-81 prenylated RAB acceptor 1.B1 (.1.2) Potri.016G126400 [exp] 159 / 1e-48 AT2G38360 209 / 2e-68 prenylated RAB acceptor 1.B4 (.1) Potri.006G104400 [exp] 147 / 4e-44 AT2G38360 206 / 5e-67 prenylated RAB acceptor 1.B4 (.1) Potri.019G124100 [exp] 139 / 3e-41 AT5G05380 140 / 8e-42 prenylated RAB acceptor 1.B3 (.1) Potri.005G219100 [exp] 84 / 6e-20 AT1G55190 132 / 8e-39 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Potri.005G054700 [exp] 84 / 7e-20 AT1G08770 137 / 1e-40 prenylated RAB acceptor 1.E (.1) Potri.002G044000 [exp] 82 / 4e-19 AT1G55190 130 / 4e-38 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Potri.002G043800 [exp] 75 / 1e-16 AT1G55190 136 / 1e-40 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03208 [flax] [poplar] PRA1 PRA1 family protein
Representative CDS sequence Show only first row Show all	>Lus10007533 pacid=23176499 polypeptide=Lus10007533 locus=Lus10007533.g ID=Lus10007533.BGIv1.0 annot-version=v1.0 ATGTCCGCACCTCCTCTTCCGATCACGAATCCATCCTCCCAGGCTGCTGAATCTCAGCCTCCGATCGCTACACCAGCCTTCCGCAGCTTCATCTCCCGCA TCTCCACTTCCGTCCGCCAAGGCTTCTCCCAGCGCCGCCCTTGGCTTGAGCTCGTCGACCGATCCGCATTCGCCAAGCCGGAATCTCTCACCGAAGCCGC CGCCCGGATCCGTAAGAACTCTGCTTATTTCAAGGTCAATTACATTTCAATGCTCGTAGTCGTCCTCGCATTCTCCCTACTCTCCCATCCTTTCTCCCTC CTCGTGCTCCTCTCGCTCCTCGCGTCCTGGATCTTCCTCTACCTCTTCCGCCCTTCGGATCAGCCCGTGGTGATCCTCGGCCGCACCTTCTCGGAGCGGG AGACGCTTGGCGTCTTGCTCGTTTCTACCGTAGTCGTTGTTTTCTTGACCAGCGTTGGATCGCTCTTGATCTCGGCGTTGATGGCCGGAGTTGCGATCGT GTGCGTGCATGGTGCTTTCAGGGTTCCGGAAGATCTGTTCCTTGAAGAGCAGGAGCCTGCTAATGCTGGATTGCTTTCCTTCCTCGGCGGCGCAGCCTCC TCTGCCGCCGCAGCCGCTGCTCCAGTTGTTGCCGGTCGCGTGTGA
AA sequence Show only first row Show all	>Lus10007533 pacid=23176499 polypeptide=Lus10007533 locus=Lus10007533.g ID=Lus10007533.BGIv1.0 annot-version=v1.0 MSAPPLPITNPSSQAAESQPPIATPAFRSFISRISTSVRQGFSQRRPWLELVDRSAFAKPESLTEAAARIRKNSAYFKVNYISMLVVVLAFSLLSHPFSL LVLLSLLASWIFLYLFRPSDQPVVILGRTFSERETLGVLLVSTVVVVFLTSVGSLLISALMAGVAIVCVHGAFRVPEDLFLEEQEPANAGLLSFLGGAAS SAAAAAAPVVAGRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10007533 [exp]	0	1
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10009842 [exp]	1.0	0.9712
AT2G18840			Integral membrane Yip1 family ...		Lus10006966 [exp]	2.4	0.9418
AT5G45420	MYB	maMYB	membrane anchored MYB, Duplica...		Lus10018605 [exp]	2.8	0.9239
AT2G18840			Integral membrane Yip1 family ...		Lus10025478 [exp]	3.2	0.9480
AT3G06470			GNS1/SUR4 membrane protein fam...		Lus10030547 [exp]	3.5	0.9198
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10040958 [exp]	4.5	0.9142
AT3G61550			RING/U-box superfamily protein...		Lus10041079 [exp]	4.7	0.8964
AT5G16510		RGP5	reversibly glycosylated protei...		Lus10020379 [exp]	5.0	0.9239
AT5G11770			NADH-ubiquinone oxidoreductase...		Lus10032155 [exp]	6.5	0.9097
AT2G37110			PLAC8 family protein (.1)		Lus10019922 [exp]	6.9	0.9169

Compare expression of checked genes

Lus10007533 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.