Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33040 444 / 3e-159 ATP3 gamma subunit of Mt ATP synthase (.1) AT4G04640 90 / 1e-20 ATPC1 ATPase, F1 complex, gamma subunit protein (.1) AT1G15700 87 / 1e-19 ATPC2 ATPase, F1 complex, gamma subunit protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042366 [exp] 496 / 1e-179 AT2G33040 508 / 0.0 gamma subunit of Mt ATP synthase (.1) Lus10012200 [exp] 506 / 2e-175 AT5G13650 1019 / 0.0 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) Lus10040068 [exp] 85 / 7e-19 AT4G04640 497 / 3e-177 ATPase, F1 complex, gamma subunit protein (.1) Lus10002078 [exp] 81 / 2e-17 AT4G04640 595 / 0.0 ATPase, F1 complex, gamma subunit protein (.1) Lus10021535 [exp] 80 / 6e-17 AT4G04640 496 / 6e-177 ATPase, F1 complex, gamma subunit protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G066100 [exp] 470 / 3e-169 AT2G33040 515 / 0.0 gamma subunit of Mt ATP synthase (.1) Potri.015G057700 [exp] 464 / 7e-167 AT2G33040 513 / 0.0 gamma subunit of Mt ATP synthase (.1) Potri.011G024700 [exp] 97 / 3e-23 AT4G04640 518 / 0.0 ATPase, F1 complex, gamma subunit protein (.1) Potri.004G014850 [exp] 85 / 6e-19 AT4G04640 557 / 0.0 ATPase, F1 complex, gamma subunit protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00231 [flax] [poplar] ATP-synt ATP synthase
Representative CDS sequence Show only first row Show all	>Lus10007534 pacid=23148129 polypeptide=Lus10007534 locus=Lus10007534.g ID=Lus10007534.BGIv1.0 annot-version=v1.0 ATGGTTGCTGCATCTAAGTTGCGAGCAATTCAGACCAAAACTGAAAATTCTCGTGGCCTCTGGCAACCTTTTACTGCTCTGCTTGGTGACACTCCTGCTG TCGATGTGAAGAAGAACATCATTGTCACTATTTCATCTGACAAAGGTCTTTGTGGAGGAATTAACTCTACTTCAGTCAAGATAAGTAGAGCACTTCACAA GTTGACTTCTGGTCCTGAAAAGGAAGTCAAATATGTAATCTTGGGAGAAAAGGCAAAAGCTCAGCTAGTGCGTGATTCAAAGAAGGATATTGAATTATCC ATCAGTGAGCTCCAAAAGAATCCATTGAATTTCACCCAGGTTGCTGTGATAGCAGATGACATCTTGAAGAATGTAGAATTTGACGCCCTGAGGATTGTGT TCAACAAATTTCAGTCGGTTGTCTCATTTCTGCCAACTATGTCAACTGTCTTATCCCCAGAGGTTGTTGAGAGAGAGGCAGAGGCTGGTGGAAGTCTTGT CGCGCTGGATTCCTATGAAATTGAAGGTGGTGAAATGAAAGGAGAAATTCTTCAGAATCTTGCTGAATTCCAGTTTTCTTGCGTAATGTTTAATGCTGTT CTAGAGAACGCTTGCAGTGAGCAAGGGGCAAGGATGTCTGCCATGGATAGTTCCAGCAGGAATGCTGGAGATATGCTTGACCGTCTGACCCTAACCTATA ACAGGACTCGTCAAGCTTCAATCACCACTGAGTTGACCGAGATTATCTCTGGAGCATCAGCACTTGAAGGTTGA
AA sequence Show only first row Show all	>Lus10007534 pacid=23148129 polypeptide=Lus10007534 locus=Lus10007534.g ID=Lus10007534.BGIv1.0 annot-version=v1.0 MVAASKLRAIQTKTENSRGLWQPFTALLGDTPAVDVKKNIIVTISSDKGLCGGINSTSVKISRALHKLTSGPEKEVKYVILGEKAKAQLVRDSKKDIELS ISELQKNPLNFTQVAVIADDILKNVEFDALRIVFNKFQSVVSFLPTMSTVLSPEVVEREAEAGGSLVALDSYEIEGGEMKGEILQNLAEFQFSCVMFNAV LENACSEQGARMSAMDSSSRNAGDMLDRLTLTYNRTRQASITTELTEIISGASALEG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33040		ATP3	gamma subunit of Mt ATP syntha...		Lus10007534 [exp]	0	1
AT5G13450		ATP5	delta subunit of Mt ATP syntha...		Lus10019706 [exp]	2.6	0.9332
AT3G47300		SELT	SELT-like protein precursor (....		Lus10001253 [exp]	4.2	0.9029
AT2G42210		ATOEP16-3	Mitochondrial import inner mem...		Lus10012024 [exp]	4.2	0.9293
AT5G52840			NADH-ubiquinone oxidoreductase...		Lus10027539 [exp]	5.5	0.9225
AT3G10920		MSD1, MEE33, AT...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10034222 [exp]	6.2	0.8938
AT3G58730			vacuolar ATP synthase subunit ...		Lus10038979 [exp]	6.2	0.8844
AT4G30010			unknown protein		Lus10015329 [exp]	7.7	0.8921
AT1G19580		GAMMACA1 ,GAMMA...	gamma carbonic anhydrase 1 (.1...		Lus10024267 [exp]	10.6	0.8925
AT5G11770			NADH-ubiquinone oxidoreductase...		Lus10032155 [exp]	12.0	0.8944
AT2G02050			NADH-ubiquinone oxidoreductase...		Lus10019137 [exp]	12.5	0.9075

Compare expression of checked genes

Lus10007534 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.