Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13650 1108 / 0 SVR3 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) AT2G31060 455 / 7e-152 EMB2785 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) AT5G08650 159 / 5e-41 Small GTP-binding protein (.1) AT5G39900 132 / 3e-32 Small GTP-binding protein (.1) AT1G45332 107 / 8e-24 Translation elongation factor EFG/EF2 protein (.1) AT2G45030 107 / 9e-24 Translation elongation factor EFG/EF2 protein (.1) AT3G22980 103 / 2e-22 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT1G56070 99 / 3e-21 LOS1, AT1G56075.1 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT3G12915 92 / 7e-19 Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) AT1G62750 90 / 3e-18 ATSCO1, ATSCO1/CPEF-G SNOWY COTYLEDON 1, Translation elongation factor EFG/EF2 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012200 [exp] 1156 / 0 AT5G13650 1019 / 0.0 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) Lus10002179 [exp] 424 / 3e-139 AT2G31060 1036 / 0.0 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) Lus10039896 [exp] 402 / 2e-131 AT2G31060 976 / 0.0 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) Lus10035968 [exp] 161 / 2e-41 AT5G08650 1102 / 0.0 Small GTP-binding protein (.1) Lus10007250 [exp] 140 / 1e-34 AT5G39900 1080 / 0.0 Small GTP-binding protein (.1) Lus10015364 [exp] 140 / 1e-34 AT5G39900 1082 / 0.0 Small GTP-binding protein (.1) Lus10025694 [exp] 132 / 2e-32 AT5G08650 1009 / 0.0 Small GTP-binding protein (.1) Lus10039840 [exp] 132 / 7e-32 AT2G45030 1289 / 0.0 Translation elongation factor EFG/EF2 protein (.1) Lus10018604 [exp] 106 / 2e-23 AT2G45030 1343 / 0.0 Translation elongation factor EFG/EF2 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G053000 [exp] 1125 / 0 AT5G13650 1123 / 0.0 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) Potri.013G123700 [exp] 454 / 2e-151 AT2G31060 1084 / 0.0 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) Potri.001G305300 [exp] 152 / 2e-38 AT5G08650 1063 / 0.0 Small GTP-binding protein (.1) Potri.017G079800 [exp] 131 / 8e-32 AT5G39900 999 / 0.0 Small GTP-binding protein (.1) Potri.003G109900 [exp] 100 / 8e-22 AT1G45332 1330 / 0.0 Translation elongation factor EFG/EF2 protein (.1) Potri.001G123600 [exp] 100 / 1e-21 AT1G45332 1337 / 0.0 Translation elongation factor EFG/EF2 protein (.1) Potri.009G152500 [exp] 100 / 3e-21 AT3G22980 1521 / 0.0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.007G065700 [exp] 98 / 8e-21 AT1G56070 1623 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.007G065600 [exp] 98 / 8e-21 AT1G56070 1620 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.005G098100 [exp] 98 / 8e-21 AT1G56070 1648 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0575 [flax] [poplar] EFTPs PF03144 [flax] [poplar] GTP_EFTU_D2 Elongation factor Tu domain 2 CL0437 [flax] [poplar] EF-G_C PF00679 [flax] [poplar] EFG_C Elongation factor G C-terminus CL0023 [flax] [poplar] P-loop_NTPase PF00009 [flax] [poplar] GTP_EFTU Elongation factor Tu GTP binding domain
Representative CDS sequence Show only first row Show all	>Lus10007535 pacid=23148101 polypeptide=Lus10007535 locus=Lus10007535.g ID=Lus10007535.BGIv1.0 annot-version=v1.0 ATGGCGACCAACTTCCATGGCTCTTCCTTCTCCCTTCTCAGCTCTCCTTCCTCTTCATCCTCCTCATCGCTCTTGCTTCCCAAGCAGTGGCTATCTCTTC CGGCGGCTTCGACCTCAGCGAAAGCTAAGAAGCAATCAATCAGGCTTCGTAACTCGCTGCTCCGTAGGTCTCCCGTGACATGCTCCGTCTCTCAGACCAC TCCTCCGGAACTAGAAGCTACTGCAGAAGAGAAGAAGAGTCAGTTGATGAGGAGAGGTGACATAAGGAACATCGCAATCGTGGCTCATGTTGACCACGGG AAGACGACTTTGGTCGACTCGATGTTGAAGCAAGCTAAGGTGTTTCGTGATAATCAAGTTATGCAGGAGAGGATTATGGACTCGAATGATCTGGAGAGGG AAAGCGGGATCACTATCCTGAGCAAGAACACTTCTATCACTTACAAGGATACCAAGATTAATATCATTGATACTCCGGGACATTCTGATTTTGGCGGTGA AGTTGAGCGTATATTGAATATGGTGGAAGGGGTTCTTTTGGTGGTAGATTCTGTTGAGGGGCCAATGCCGCAAACTCGATTTGTTCTGAAGAAGGCTCTT GAGTTTGGCCATGCTGTTGTTGTCGTTGTCAATAAAATCGACAGGCCTTCAGCACGTCCAGATCATGTCATCAATTCCACCTTTGAGCTATTCATTGAGC TGAATGCATCAGATGAGCAGTGTGATTTCCAAGCCATTTATGCCAGTGGCATTCAAGGAAAGGCAGGATTGTCTCCTGATGATTTGGCTGACGATCTTGG GCCATTGTTTGAGACTGTGATCAGATGCATACCTGGACCTCTTATCAATAAAGATGGTGCTCTGCAAATGCTTGCCACAAATCTTGAATATGACGAACAT AAGGGGCGCATAGCTATTGGACGTGTTCATTCAGGGGTCATGAGGAGAGGGATGGAAGTCAGGGTATGCACATCGGAGGATTCATGTAGATTTGCAAGGC TTAGTGAGCTTTTTGTGTACGAGAAATTCTATAGGGTTCCAGTAGACAGTGTTGAAGCGGGTGACATTTGTGCTGCTTGTGGAATCGAGGACATTCAGAT TGGGGAGACCATTGCGGATAAAGCGTTAGGCAAGCCATTACCTTCTATCAAAGTGGAAGAGCCAACTGTGAAAATGGCTTTCTCCATAAATACTTCACCT TTTGTCGGACGAGAGGGGAAATATGTTACCAGCCGAAACTTAAGAGATCGACTATACCGCGAACTTGAACGGAATTTGGCTATGAAAGTTGAAGATGGTG AAACCTCAGACACTTTTGTTGTTAGTGGTCGTGGTACTCTACACATAACCATATTGATAGAGAACATGCGAAGGGAAGGATATGAATTCATGGTAGGGCC TCCGAAGGTGATTAACAAAAGGGGACCGGATGACAAATTGTTGGAACCATTTGAGATTGCTACTGTTGAGGTTCCTGAAGTGCACCAGGGTGCTGTTATG GAACTTTTGGGCAAACGGCGAGGACAAATAACTGACATGCAAGGAGTCGGGTCGGAGGGTACTACACTACTCAAATACAGAATCCCGACCCGTGGCCTTC TCGGGTTGAGAAATGCAATCCTGACGGCCTCCCGTGGGACAGCAATTCTCAACACCATTTTCGACGGCTACGGCCCTTGGGCTGGCGATATCAGCACCAG AGATCAGGGTTCATTGGTAGCATTCGAGGAGGGAACATCGACCTCATACGCGATGGCTAGCTCACAGGAAAGAGGCCTGTTGTTCATTGCTCCCGGTGCG GAGGTCTACAAAGGTCAGATAGTCGGGATCCATCAGCGGTCTGGCGACCTGGGTCTCAACGTCTGCAAGAAAAAGGCCGCGACTAATGTTCGTTCGAACA AGGAGGTGTCAGTCGTGCTCGACACGCCCTTGGATTACAGTCTCGACGACTGCATCGAGTACATCCAGGAAGACGAGCTGGTGGAGGTGACGCCATCAAG CATTAGGATGTGCAAGAATCCCAAGTACTCCAAGAAGGGCAGTAGATCGTCGTAG
AA sequence Show only first row Show all	>Lus10007535 pacid=23148101 polypeptide=Lus10007535 locus=Lus10007535.g ID=Lus10007535.BGIv1.0 annot-version=v1.0 MATNFHGSSFSLLSSPSSSSSSSLLLPKQWLSLPAASTSAKAKKQSIRLRNSLLRRSPVTCSVSQTTPPELEATAEEKKSQLMRRGDIRNIAIVAHVDHG KTTLVDSMLKQAKVFRDNQVMQERIMDSNDLERESGITILSKNTSITYKDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKAL EFGHAVVVVVNKIDRPSARPDHVINSTFELFIELNASDEQCDFQAIYASGIQGKAGLSPDDLADDLGPLFETVIRCIPGPLINKDGALQMLATNLEYDEH KGRIAIGRVHSGVMRRGMEVRVCTSEDSCRFARLSELFVYEKFYRVPVDSVEAGDICAACGIEDIQIGETIADKALGKPLPSIKVEEPTVKMAFSINTSP FVGREGKYVTSRNLRDRLYRELERNLAMKVEDGETSDTFVVSGRGTLHITILIENMRREGYEFMVGPPKVINKRGPDDKLLEPFEIATVEVPEVHQGAVM ELLGKRRGQITDMQGVGSEGTTLLKYRIPTRGLLGLRNAILTASRGTAILNTIFDGYGPWAGDISTRDQGSLVAFEEGTSTSYAMASSQERGLLFIAPGA EVYKGQIVGIHQRSGDLGLNVCKKKAATNVRSNKEVSVVLDTPLDYSLDDCIEYIQEDELVEVTPSSIRMCKNPKYSKKGSRSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13650		SVR3	SUPPRESSOR OF VARIEGATION 3, e...		Lus10007535 [exp]	0	1
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10010591 [exp]	2.4	0.9144
AT5G38420			Ribulose bisphosphate carboxyl...		Lus10009172 [exp]	4.0	0.9331
AT1G12900		GAPA-2	glyceraldehyde 3-phosphate deh...		Lus10012591 [exp]	6.6	0.9256
AT5G13650		SVR3	SUPPRESSOR OF VARIEGATION 3, e...		Lus10012200 [exp]	8.0	0.9017
AT3G54050		HCEF1	high cyclic electron flow 1 (....		Lus10017195 [exp]	11.5	0.9173
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Lus10018162 [exp]	14.1	0.9004
AT5G38410			Ribulose bisphosphate carboxyl...		Lus10033558 [exp]	15.0	0.9148
AT1G55480		ZKT	protein containing PDZ domain,...		Lus10013403 [exp]	15.9	0.9130
AT3G60750			Transketolase (.1.2)		Lus10031708 [exp]	16.2	0.9124
AT2G13360		SGAT, AGT1, AGT	L-serine:glyoxylate aminotrans...		Lus10022424 [exp]	16.3	0.9025

Compare expression of checked genes

Lus10007535 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.