Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57520 1211 / 0 RS2, ATSIP2 raffinose synthase 2, seed imbibition 2 (.1.2.3) AT1G55740 907 / 0 RS1, ATSIP1 raffinose synthase 1, seed imbibition 1 (.1) AT5G20250 860 / 0 RS6, DIN10 raffinose synthase 6, DARK INDUCIBLE 10, Raffinose synthase family protein (.1.2.3.4) AT5G40390 518 / 1e-173 RS5, SIP1 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1) AT4G01970 309 / 6e-93 RS4, ATSTS raffinose synthase 4, stachyose synthase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017516 [exp] 845 / 0 AT5G20250 1145 / 0.0 raffinose synthase 6, DARK INDUCIBLE 10, Raffinose synthase family protein (.1.2.3.4) Lus10027679 [exp] 536 / 0 AT5G40390 1040 / 0.0 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1) Lus10022240 [exp] 338 / 5e-108 AT5G40390 744 / 0.0 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1) Lus10022241 [exp] 189 / 1e-54 AT5G40390 342 / 2e-112 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1) Lus10008771 [exp] 164 / 2e-46 AT5G40390 339 / 1e-112 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1) Lus10041370 [exp] 54 / 3e-08 AT5G40390 71 / 8e-15 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1) Lus10014902 [exp] 49 / 6e-06 AT5G55500 254 / 2e-81 "beta-1,2-xylosyltransferase", ARABIDOPSIS THALIANA BETA-1,2-XYLOSYLTRANSFERASE, beta-1,2-xylosyltransferase (.1) Lus10039945 [exp] 0 / 1 AT5G40390 164 / 8e-58 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1) Lus10039946 [exp] 0 / 1 AT5G40390 123 / 9e-38 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G052800 [exp] 1301 / 0 AT3G57520 1290 / 0.0 raffinose synthase 2, seed imbibition 2 (.1.2.3) Potri.016G054700 [exp] 1283 / 0 AT3G57520 1278 / 0.0 raffinose synthase 2, seed imbibition 2 (.1.2.3) Potri.011G166700 [exp] 960 / 0 AT1G55740 1154 / 0.0 raffinose synthase 1, seed imbibition 1 (.1) Potri.006G065700 [exp] 883 / 0 AT5G20250 1154 / 0.0 raffinose synthase 6, DARK INDUCIBLE 10, Raffinose synthase family protein (.1.2.3.4) Potri.018G126400 [exp] 872 / 0 AT5G20250 1218 / 0.0 raffinose synthase 6, DARK INDUCIBLE 10, Raffinose synthase family protein (.1.2.3.4) Potri.015G086400 [exp] 775 / 0 AT3G57520 827 / 0.0 raffinose synthase 2, seed imbibition 2 (.1.2.3) Potri.016G002300 [exp] 719 / 0 AT3G57520 758 / 0.0 raffinose synthase 2, seed imbibition 2 (.1.2.3) Potri.017G036700 [exp] 538 / 0 AT5G40390 1118 / 0.0 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1) Potri.T124908 [exp] 534 / 4e-180 AT5G40390 1055 / 0.0 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1) Potri.004G207900 [exp] 531 / 5e-179 AT5G40390 1145 / 0.0 seed imbibition 1-like, raffinose synthase 5, Raffinose synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF05691 [flax] [poplar] Raffinose_syn Raffinose synthase or seed imbibition protein Sip1
Representative CDS sequence Show only first row Show all	>Lus10007537 pacid=23148091 polypeptide=Lus10007537 locus=Lus10007537.g ID=Lus10007537.BGIv1.0 annot-version=v1.0 ATGACGGTTACCCCTCAGATCTCAGTTAACGATGGAAACCTGGTGGTTCAGGGGAAAACCATACTAACAGGAGTGCCTAACAACATTGTGCTCACACCTG GTCAAGGAATTGGCCCAGCTGCTGGTGCTTTCATTGGCGCCACTGCAGAAAATAGCAAAAGCCTGCATGTCTTTCCTGTTGGTGTTCTTGAGGGTCTTAG ATTTATGTGTTGTTTCCGGTTCAAGCTGTGGTGGATGACCCAGAGGATGGGCACAAATGGGAAAGATATCCCGTTGGAGACACAGTTCCTGCTTGTGGAA AGCAAAGATGGCGGCGAGGGTGTTGATCAGAATGATGGTGAAACCATCTACACGGTCTTCCTCCCACTCCTTGAGGGCCAATTCCGCGCTGTCCTTCAAG GAAACACGAACAACGAGCTGGAGATTTGCTTGGACAGTGGGGACACAGCTGTGGAGACCAGCCAAGGTCTTTACCTTGTCTACATGCATACTGGAACCAA CCCATTTGAAGTTATCGACCAGGCTGTGAGGGCGGTTGAAAAACATATGCAAACATTCATGCACCGAGAGAAGAAAAAGTTGCCTTCCTTTCTCGACTGG TTTGGTTGGTGCACTTGGGATGCGTTTTACACCGATGTCACAGCCGAGGGTGTTGAGCAAGGCCTTTCCAGCCTTTCCAAGGGAGGAACTCCTCCACGTT TCTTGATCATAGATGACGGTTGGCAGCAGATTGAAACTAAAAAGAAGGATGAGAATGCTGTCGTGCAAGAAGGAGCACAATTCGCCAGTATGCTTACTGG GATAAAGGAGAACGAAAAATTCCAGAAGAGCCGCGAAACACACGAGGAGTCAACAGGGTTGAAGCACGTAGTAGAAGATGCGAAGCAACATCACAATGTG AAATATGTGTATGTGTGGCATGCTATGGCTGGATACTGGGGTGGAGTGAAACCAGCAGCAGCCGGGATGGAGCACTACGACACTGCTCTTGCGTATCCCG TCCAGTCTCCTGGCGTGTTAGGCAACCAGCCGGACATCGTCATGGACAGCCTATCTGTTCATGGACTCGGTTTAGTGCCCCCAAGGAAGGTTTTCAACTT CTACAACGAGCTCCACGCCTACTTGGCCTCGTGCGGCATAGATGGAGTCAAAGTTGATGTGCAGAACATCATTGAAACTCTCGGTGCTGGTCATGGTGGC CGAGTATCTCTCACTCGCAGCTATATCCAAGCGCTCGAGGCTTCGATCGCTCGCAACTTCCGTGATAACGGATGCATTGCTTGCATGTGCCACAATACTG ATGGACTCTACAGTGCCAAGCAGACAGCTGTGGTTAGAGCCTCCGACGACTTCTACCCTCGTGACCCTGCCTCCCACACGATCCACATTTCCTCTGTGGC ATACAACACTCTTTTCCTCGGAGAGTTCATGCAGCCTGATTGGGACATGTTCCATAGTCTACACCCTGCCGCAGATTATCATGGTGCAGCTCGAGCCATC GGTGGATGTCCAATCTACGTCAGTGACAAGCCAGGCAACCACAATTTTGAGCTATTAAAGAAGCTCGTACTTCCCGACGGATCAATTCTACGAGCTCAAC TTCCAGGCAGGCCAACCCGGGACTGCCTCTTTGTCGATCCAGCACGAGATGGCACCAGCTTGCTCAAGGTATGGAATGTGAACAAGTCCACTGGCGTGGT TGGTGTCTTCAACTGCCAAGGTGCCGGTTGGTGCAAGGTCGAAAAGAAGACTCGCATCCACGATACATCTCCCGGTACTCTCACTGCTTCTGTTCGTGCT ACTGACGTTGATTCCATCGCTCGTATCGCTGGCCCCAATTGGAATGGCGAGACTGTTGTATACCTCCACAGATCAGGAGAACTAATTCGGTTACCGAAAG GTGCGTCGGTACCCGTCACTCTCAAAGTTCTAGAGTACGAACTCTTCCATTTCTGCCCAGTCAAGGAGGTATCTCCCGGGGTCTCATTCGCTGCCATAGG GCTGCTCGACATGTTCAACTCAGGTGGTGCTGTGGACCAGGTCGAAATCGATATGAAAACCATTTCCCTCAAAGTCAGGGGAACAGGGAGGCTCGGTGTC TACTTGACTCAGCGACCATCGAAATGCACTGTAGCAAATGTGGAGACCGATTTCAGCTATGATCCAGACACGGGGCTTGCGACGCTGACCCTGCCTGTTC CTCGGGAGGAGATGTACAGATGGCCCGTCGAGATCCATGTTTGA
AA sequence Show only first row Show all	>Lus10007537 pacid=23148091 polypeptide=Lus10007537 locus=Lus10007537.g ID=Lus10007537.BGIv1.0 annot-version=v1.0 MTVTPQISVNDGNLVVQGKTILTGVPNNIVLTPGQGIGPAAGAFIGATAENSKSLHVFPVGVLEGLRFMCCFRFKLWWMTQRMGTNGKDIPLETQFLLVE SKDGGEGVDQNDGETIYTVFLPLLEGQFRAVLQGNTNNELEICLDSGDTAVETSQGLYLVYMHTGTNPFEVIDQAVRAVEKHMQTFMHREKKKLPSFLDW FGWCTWDAFYTDVTAEGVEQGLSSLSKGGTPPRFLIIDDGWQQIETKKKDENAVVQEGAQFASMLTGIKENEKFQKSRETHEESTGLKHVVEDAKQHHNV KYVYVWHAMAGYWGGVKPAAAGMEHYDTALAYPVQSPGVLGNQPDIVMDSLSVHGLGLVPPRKVFNFYNELHAYLASCGIDGVKVDVQNIIETLGAGHGG RVSLTRSYIQALEASIARNFRDNGCIACMCHNTDGLYSAKQTAVVRASDDFYPRDPASHTIHISSVAYNTLFLGEFMQPDWDMFHSLHPAADYHGAARAI GGCPIYVSDKPGNHNFELLKKLVLPDGSILRAQLPGRPTRDCLFVDPARDGTSLLKVWNVNKSTGVVGVFNCQGAGWCKVEKKTRIHDTSPGTLTASVRA TDVDSIARIAGPNWNGETVVYLHRSGELIRLPKGASVPVTLKVLEYELFHFCPVKEVSPGVSFAAIGLLDMFNSGGAVDQVEIDMKTISLKVRGTGRLGV YLTQRPSKCTVANVETDFSYDPDTGLATLTLPVPREEMYRWPVEIHV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57520		RS2, ATSIP2	raffinose synthase 2, seed imb...		Lus10007537 [exp]	0	1
AT5G62530		ATP5CDH, ALDH12...	ARABIDOPSIS THALIANA DELTA1-PY...		Lus10004264 [exp]	5.1	0.9288
AT3G02540		RAD23C, RAD23-3	RADIATION SENSITIVE23C, PUTATI...		Lus10034307 [exp]	6.2	0.9177
AT2G39950			unknown protein		Lus10040223 [exp]	7.0	0.9354
AT4G32480			Protein of unknown function (D...		Lus10011174 [exp]	8.5	0.9496
AT5G17450		HIPP21	heavy metal associated isopren...		Lus10028531 [exp]	8.5	0.9258
AT5G53050			alpha/beta-Hydrolases superfam...		Lus10022392 [exp]	10.0	0.9327
AT3G06850		DIN3, LTA1, BCE...	DARK INDUCIBLE 3, 2-oxoacid de...		Lus10006498 [exp]	14.8	0.9453
AT3G06850		DIN3, LTA1, BCE...	DARK INDUCIBLE 3, 2-oxoacid de...		Lus10037492 [exp]	15.7	0.9351
AT5G62530		ATP5CDH, ALDH12...	ARABIDOPSIS THALIANA DELTA1-PY...		Lus10042174 [exp]	16.2	0.9433
AT5G20250		RS6, DIN10	raffinose synthase 6, DARK IND...		Lus10017516 [exp]	17.7	0.9442

Compare expression of checked genes

Lus10007537 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.