Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05170 1731 / 0 IXR1, CEV1, ATH-B, ATCESA3, CESA3 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) AT4G32410 1475 / 0 AtCESA1, RSW1, CESA1 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) AT2G25540 1440 / 0 CESA10 cellulose synthase 10 (.1) AT5G44030 1411 / 0 IRX5, NWS2, CESA4 IRREGULAR XYLEM 5, cellulose synthase A4 (.1) AT5G17420 1400 / 0 ATCESA7, MUR10, IRX3 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) AT5G64740 1361 / 0 PRC1, IXR2, E112, CESA6 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) AT5G09870 1354 / 0 CESA5 cellulose synthase 5 (.1) AT2G21770 1339 / 0 CESA09, CESA9 cellulose synthase A9 (.1) AT4G39350 1332 / 0 ATH-A, CESA2, ATCESA2 cellulose synthase A2 (.1) AT4G18780 1282 / 0 LEW2, IRX1, ATCESA8, CESA8 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012198 [exp] 2158 / 0 AT5G05170 1774 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10039607 [exp] 1709 / 0 AT5G05170 1820 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10028597 [exp] 1503 / 0 AT4G32410 1922 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Lus10018902 [exp] 1496 / 0 AT4G32410 1915 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Lus10002939 [exp] 1351 / 0 AT5G64740 1870 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10041063 [exp] 1348 / 0 AT5G64740 1868 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10003526 [exp] 1343 / 0 AT5G64740 1863 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10006161 [exp] 1287 / 0 AT5G64740 1734 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10007296 [exp] 1281 / 0 AT4G18780 1671 / 0.0 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G054900 [exp] 1865 / 0 AT5G05170 1754 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Potri.006G052600 [exp] 1847 / 0 AT5G05170 1749 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Potri.009G060800 [exp] 1738 / 0 AT5G05170 1838 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Potri.001G266400 [exp] 1733 / 0 AT5G05170 1838 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Potri.006G251900 [exp] 1518 / 0 AT4G32410 1899 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Potri.018G029400 [exp] 1516 / 0 AT4G32410 1898 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Potri.018G103900 [exp] 1432 / 0 AT5G17420 1730 / 0.0 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) Potri.006G181900 [exp] 1429 / 0 AT5G17420 1730 / 0.0 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) Potri.013G019800 [exp] 1424 / 0 AT5G64740 1512 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Potri.005G027600 [exp] 1407 / 0 AT5G64740 1506 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF03552 [flax] [poplar] Cellulose_synt Cellulose synthase
Representative CDS sequence Show only first row Show all	>Lus10007538 pacid=23148109 polypeptide=Lus10007538 locus=Lus10007538.g ID=Lus10007538.BGIv1.0 annot-version=v1.0 ATGGAGCTCGAAGCCGATCATGGCGGGGTCAGTTCTCCCTCTCTCCCTTCTATTTCACGACATTTCAACTGTTTCTTGCTCGCTGCTATTCGCGACATCG CCGATCCAGTCCTTGTTTACTCCACCAAGAACGTGAAGCAGCAGGTGTGCCAGATCTGCAGCGATGACATTGGGAAGACTTCGGATGGAGAACCTTTCCT TGCTTGCCATGTCTGTGCTTTTCCTGTATGCCGTCCTTGCTATGAGTATGAACGGAAAGACGGGACTCAGTCATGTCCTCAGTGCAAAACCAAATACACC AGGCATAAAGGTAGCCCTGCAATTCACGGGGAGCAGGTGGATGATGGTGAGTTTAAGGATGTGGGCACCAAGTCGACTGCTCAACCAGGAGGGATTCAAG ATGAGAAGCATAAGATAGACCGTATGTTGGGTTGGGAGTCCGGCTCTGGCCGTAAGGACTATGTTACTCCCTCGTATGAGAATCTTACTCACATCCCTTA TGCAGCCAGTCGACCATCGATGTCTGGGGAGCTCTCCGCTGCATCTCCTGGACGGTACTCGATGGCTTCTCCCGAAAGTGGCAGCAGAGCAACCATTAGA CTGGGAGATCAGCAAAGGGAATATGGCTCTGGAGGTTTTGGAAATGTAGCTTGGAAAGAGAGAATTGATGGTTGGAAGATGAAGCCAGAAAAGAATACAG CTCCACCAAGTGTTAGCAATGCGCCTTCAGAAGGCAGGGGTGGTGTCGATTTTGATGCCAGTACTGATATTCTTATGGATGACTTACTAAATGATGAAAC TCGCCAACCGCTCTCAAGGAAGGTTCCGATTTCTTCGTCTAAAATCAATCCATACCGGATGGTCATTGTGTTGCGGCTTATCATCCTTTGCATTTTCTTT CACTATCGTCTCACAAACCCTGTCAGAGATGCCATTCCCTTGTGGTTGATTTCTGTTATTTGTGAGATTTGGTTTGCAGTATCATGGATATTGGATCAGT TCCCTAAATGGTTCCCTGTGAACCGGGAGACATATCTTGACCGTCTGTCCCTCAGATATGAAAAAGAAGGAGAGCCATCTCAATTAGCTTCTGTTGACAT CTTTGTCAGTACGGTGGACCCATTAAAAGAACCTCCAATCGTCACAGCCAATACAGTGCTATCTATTCTTGCAGTAGATTATCCAGTGGACAAGGTTTCT TGCTATGTTTCAGATGATGGAGCTGCTATGTTGAGTTTTGAATCCCTAGCTGAAACAGCAGAATTTGCTCGAAAATGGGTTCCTTTCTGCAAGAAATATA ACATTGAACCAAGAGCTCCTGAGTTCTATTTCTCCCAGAAAATTGATTATTTGAAAGATAAGGTTCAGCCTTCTTTTGTCAAAGACCGAAGATCAATGAA GAGAGAATACGAAGAATTCAAGATTCGTGTCAATGGCCTTGTAGCCAAGGCACAGAAGGTTCCTGAGGAAGGATGGTTCATGCAGGATGGTACGCCTTGG CCGGGTAACAATACCAGAGATCATCCAGGGATGATTCAGGTTTTCCTTGGGCACAGTGGGGGCCTTGACAGTGATGGCAATGAACTTCCAAGGCTGGTAT ATGTATCTCGTGAGAAACGTCCTGGTTTTCAACATCACAAGAAGGCTGGTGCCATGAATTCCCTTGTCCGAGTTTCTGCTGTTTTGACCAATGGGCCGTT CTTGCTAAATCTTGATTGTGATCATTACATAAATAACAGCAAGGCTCTGAGAGAAGCTATGTGTTTCCTAATGGATCCTAACCTTGGAAGACAAGTGTGT TATGTCCAGTTCCCACAGAGATTTGATGGTATTGATAAAAATGATCGATATGCCAATCGTAACACTGTCTTCTTCGATATGAATTTGAGAGGTTTGGATG GTATCCAAGGACCAGTGTATGTGGGCACGGGATGTGTTTTCAACAGAACAGCATTGTATGGCTACGAGCCCCCCATTAAGGCGAAGCATACAAAACCAGG GTTCTTATCTTCATGCTTCGGTGGTTCCAGAAAAAAGAGTTCCAAATCGAGCAAAAAGGACTCAAAGAAGAAGTCTAGCAGGCATGTTGACCCTACTGTC CCAGTATTTAATCTGGAAGATATAGAAGAAGGGGTTGAAGGAGCTGGATTTGACGACGAGAAGTCACTGCTTATGTCTCAAATGACACTAGAGAAGAGAT TTGGTCAGTCAGCTGTGTTTGTTGCTTCAACACTTATGGAAAATGGAGGTGTTCCTGAATCTGCTGCCCCTGAGGCTCTCCTGAAAGAAGCTATTCATGT CATCAGCTGTGGGTATGAGGACAAGACTGATTGGGGACAAGAGATTGGATGGATTTATGGCTCTGTCACAGAGGATATTCTGACAGGATTCAAGATGCAT GCCCGCGGTTGGAAATCGATCTATTGCATGCCAGAACGCGCTGCATTCAAAGGTTCTGCACCCATTAATCTTTCCGATCGTCTGAATCAAGTGCTCCGAT GGGCTCTAGGTTCGGTTGAGATTCTGTTCAGTCGGCATTGCCCCATGTGGTACGGCTATGGTGGAAGGCTCAAGTTCCTCGAGAGATTTGCCTACATCAA TACCACCATTTACCCCATCACCTCCATCCCTCTGCTTGCCTACTGTACATTGCCAGCTGTCTGCCTCCTCACCGGGAAGTTCATCATTCCTCAGATCAGT AACCTTGCTAGTATATGGTTTATTTCCCTCTTTCTCTCCATCTTCGCAACCGGTATCCTCGAAATGAGATGGAGTGGGGTTGGCATTGACGAGTGGTGGA GAAACGAGCAGTTCTGGGTCATTGGAGGAGTGTCAGCACATCTCTTCGCCGTCTTCCAAGGTCTCCTCAAGGTCCTAGCAGGTATCGACACCAACTTCAC TGTCACGTCCAAGGCCAACGACGAGGACGGAGACTTCGCCGAGCTCTACCTCTTCAAATGGACGACTCTCCTGATCCCGCCCACCACATTGCTCGTGATC AACCTCGTCGGAGTCGTGGCAGGAGTCTCGTACGCCATCAACAGCGGGTACCAGTCATGGGGCCCCCTATTCGGTAAGCTCTTCTTCGCCTTCTGGGTGA TTGTCCATCTCTACCCTTTCCTCAAAGGTCTCATGGGTCGCCAGAACCGAACCCCCACGATCGTCGTGGTGTGGTCGATCCTACTTGCGTCCATCTTCTC GCTGCTGTGGGTCCGCATCGACCCCTTCACGACCCGGGTCACAGGCCCTAATGTCGACCAGTGTGGAATCAACTGCTAG
AA sequence Show only first row Show all	>Lus10007538 pacid=23148109 polypeptide=Lus10007538 locus=Lus10007538.g ID=Lus10007538.BGIv1.0 annot-version=v1.0 MELEADHGGVSSPSLPSISRHFNCFLLAAIRDIADPVLVYSTKNVKQQVCQICSDDIGKTSDGEPFLACHVCAFPVCRPCYEYERKDGTQSCPQCKTKYT RHKGSPAIHGEQVDDGEFKDVGTKSTAQPGGIQDEKHKIDRMLGWESGSGRKDYVTPSYENLTHIPYAASRPSMSGELSAASPGRYSMASPESGSRATIR LGDQQREYGSGGFGNVAWKERIDGWKMKPEKNTAPPSVSNAPSEGRGGVDFDASTDILMDDLLNDETRQPLSRKVPISSSKINPYRMVIVLRLIILCIFF HYRLTNPVRDAIPLWLISVICEIWFAVSWILDQFPKWFPVNRETYLDRLSLRYEKEGEPSQLASVDIFVSTVDPLKEPPIVTANTVLSILAVDYPVDKVS CYVSDDGAAMLSFESLAETAEFARKWVPFCKKYNIEPRAPEFYFSQKIDYLKDKVQPSFVKDRRSMKREYEEFKIRVNGLVAKAQKVPEEGWFMQDGTPW PGNNTRDHPGMIQVFLGHSGGLDSDGNELPRLVYVSREKRPGFQHHKKAGAMNSLVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFLMDPNLGRQVC YVQFPQRFDGIDKNDRYANRNTVFFDMNLRGLDGIQGPVYVGTGCVFNRTALYGYEPPIKAKHTKPGFLSSCFGGSRKKSSKSSKKDSKKKSSRHVDPTV PVFNLEDIEEGVEGAGFDDEKSLLMSQMTLEKRFGQSAVFVASTLMENGGVPESAAPEALLKEAIHVISCGYEDKTDWGQEIGWIYGSVTEDILTGFKMH ARGWKSIYCMPERAAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPMWYGYGGRLKFLERFAYINTTIYPITSIPLLAYCTLPAVCLLTGKFIIPQIS NLASIWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKANDEDGDFAELYLFKWTTLLIPPTTLLVI NLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRIDPFTTRVTGPNVDQCGINC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05170		IXR1, CEV1, ATH...	ISOXABEN RESISTANT 1, CONSTIT...		Lus10007538 [exp]	0	1
AT4G32410		AtCESA1, RSW1, ...	RADIALLY SWOLLEN 1, cellulose ...		Lus10028597 [exp]	1.4	0.9411
AT4G32410		AtCESA1, RSW1, ...	RADIALLY SWOLLEN 1, cellulose ...		Lus10018902 [exp]	3.5	0.9050
AT5G47780		GAUT4	galacturonosyltransferase 4 (....		Lus10038739 [exp]	5.3	0.8479
AT3G14300		ATPMEPCRC, ATPM...	A. THALIANA PECTIN METHYLESTER...		Lus10003934 [exp]	6.0	0.8735
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10002940 [exp]	7.4	0.8776
AT1G10950		AtTMN1	transmembrane nine 1 (.1)		Lus10001368 [exp]	8.8	0.8881
AT5G42905			Polynucleotidyl transferase, r...		Lus10007199 [exp]	9.1	0.7849
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10003526 [exp]	10.2	0.8590
AT1G78900		VHA-A	vacuolar ATP synthase subunit ...		Lus10037321 [exp]	10.5	0.8575
AT2G21390			Coatomer, alpha subunit (.1)		Lus10025780 [exp]	11.7	0.8847

Compare expression of checked genes

Lus10007538 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.