Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012197 [exp] 0 / 1 AT3G57500 68 / 6e-16 unknown protein
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007539 pacid=23148075 polypeptide=Lus10007539 locus=Lus10007539.g ID=Lus10007539.BGIv1.0 annot-version=v1.0 ATGAGGAACTTGGAAGAAAGCAGCTGGCTAAACGGACTAGCGCCAGCGGCCGCAATGGAGCCGCCGGCAGAAGAGGGCGGAAATAGCAGACATTACACGG GGAGATCAGTAGAGACGCTGGTGTTGTGCTGGCAGTTATCATCATCGCCGCAGTGTTTGCTGGATTCTTGGTTCGCTTATGTGCGGTCCACCGCAGCGGC GAGCATGACGTCGTTGAAGGCAGCTGGATCGAGAGAAAGTGCCGGAGCTGCATCGACGGTGGGGTCGTGGCGGCTCGGCCTCCACCAGCACCGGAAGAGC CAAAGAACCGTTGTGACCGTTGCCAAGATGCAATTGACTCGGTGA
AA sequence Show only first row Show all	>Lus10007539 pacid=23148075 polypeptide=Lus10007539 locus=Lus10007539.g ID=Lus10007539.BGIv1.0 annot-version=v1.0 MRNLEESSWLNGLAPAAAMEPPAEEGGNSRHYTGRSVETLVLCWQLSSSPQCLLDSWFAYVRSTAAASMTSLKAAGSRESAGAASTVGSWRLGLHQHRKS QRTVVTVAKMQLTR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10007539 [exp]	0	1
AT2G33320			Calcium-dependent lipid-bindin...		Lus10003570 [exp]	2.6	0.6780
AT5G03620			Subtilisin-like serine endopep...		Lus10035599 [exp]	4.5	0.7080
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Lus10041128 [exp]	4.7	0.7161
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10027430 [exp]	9.2	0.7109
AT4G33985			Protein of unknown function (D...		Lus10002400 [exp]	9.2	0.7114
AT2G15130			Plant basic secretory protein ...		Lus10026583 [exp]	11.5	0.6967
AT1G23410			Ribosomal protein S27a / Ubiqu...		Lus10013082 [exp]	15.2	0.7143
					Lus10039750 [exp]	15.5	0.6660
					Lus10002152 [exp]	19.1	0.6502
					Lus10010117 [exp]	19.9	0.6502

Compare expression of checked genes

Lus10007539 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.