Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41820 1063 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G33170 420 / 4e-132 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT1G17230 414 / 3e-130 Leucine-rich receptor-like protein kinase family protein (.1) AT5G63930 414 / 6e-130 Leucine-rich repeat protein kinase family protein (.1) AT1G34420 394 / 6e-124 leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G48940 379 / 1e-116 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G61480 376 / 2e-116 PXY, TDR TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) AT5G56040 375 / 1e-115 Leucine-rich receptor-like protein kinase family protein (.1.2) AT3G24240 365 / 9e-112 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT1G34110 352 / 3e-107 Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012193 [exp] 1394 / 0 AT2G41820 1232 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011761 [exp] 411 / 3e-130 AT5G63930 913 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10009429 [exp] 395 / 2e-124 AT1G34420 809 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10027221 [exp] 366 / 1e-112 AT5G61480 1263 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Lus10019248 [exp] 359 / 4e-110 AT5G65700 1479 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10000509 [exp] 360 / 5e-110 AT1G34110 1464 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10011756 [exp] 360 / 8e-110 AT3G24240 1455 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10011576 [exp] 353 / 2e-109 AT5G65700 1330 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10028612 [exp] 356 / 2e-108 AT5G48940 1051 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G055400 [exp] 1112 / 0 AT2G41820 1311 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G051700 [exp] 1111 / 0 AT2G41820 1343 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G025500 [exp] 420 / 3e-132 AT5G63930 1320 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G084800 [exp] 409 / 8e-130 AT1G34420 753 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.013G051300 [exp] 411 / 4e-129 AT5G63930 1281 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G174900 [exp] 407 / 1e-127 AT2G33170 1348 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.011G139700 [exp] 405 / 5e-127 AT1G17230 1363 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.013G114200 [exp] 401 / 1e-126 AT1G34420 793 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.001G053400 [exp] 395 / 4e-123 AT2G33170 1311 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.015G080800 [exp] 375 / 2e-115 AT5G56040 1019 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10007543 pacid=23148090 polypeptide=Lus10007543 locus=Lus10007543.g ID=Lus10007543.BGIv1.0 annot-version=v1.0 ATGCTCAAGTCACTCAACCTTTCCAACAACTTGCTTGTTGGAAAGATTCCTGATGAGCTTCAAAAAGTTGAGAAGTTGGAAGAGCTTCAGATTTCGAGTA ACAATCTCAACGGTTCAATCCCATTATGGATAGGGAATCTCACTCAGTTGAAGGTTTTCACCGCCTATGAGAATCTCTTAACCGGGGAGATTCCGATTCC CAACAATTTAGGGTTCTTCTTCCCTGAGCTGAAGCTTCTGAATCTCCATTCTAATCAGCTTTCGGGGTTGATTCCGGATAAGTTGTTTCTTCATGGAAAG TTGGAATCTTTGATTCTGACTCAGAACAGATTCAAAGGTGAGATTCCTGATTCAATTGGGAAATGTAGGAGTCTGTCCAGTATAAGGATTGGGAACAATG AACTTGTTGGAGGGATTCCAGTTACAATTGGTAATCTCACCAGCTTGACTTACTTCGAAGCAGACAGTAATCATTTATCCGGTGAGATTGTTTCGGAGTT TTCGAAATGCTTGAATCTTACCTTACTGAACTTGGCCTCGAACGGTTTCACTGGCGTTATCCCGCTCGAGCTGGGACAGCTCGAGAATCTCCAGGAGCTG ATACTCTCGGAGAACGATCTGTATGGAGACATCCCTAAGTCGATCGTAGGGTGCAGAAGTCTCAACAAGCTCGACCTCACGAATAATCGGATCAATGGCA CGATACCGGTGGAGATCTGTAGCATTTCGAGACTGCAGTACTTGCTTCTAGGGCAGAACTCGATGCGAGGCGAGATACCTCATGAGATTGGGAGCTGTTT GAAGCTGCTCGAGTTCCAAATCGGTGGTAACTACTTGGTTGGAACTATCCCACCCGAAATCGGCCACATCAGGAACTTGCAGATTGCATTAAACTTGAGC TTCAACCATCTCCATGGATCGGTTCCGTCCGAGTTGGGGAAGCTTGACAAGCTTGTTTCTTTGGATGTGTCTAATAACCAGTTATCTGGTGATATCCCAC TTTCATTGAAAGGAATGTTGAGCTTGATTGAGGTCAACTTTTCGAACAATCTGCTTACTGGTGAAGTCCCTACTTTCGTACCGTTCCAAAAGAGTCCGAA TTCGAGCTTTATGGGGAATAAGGGACTCTGTGGGGAGCCGCTGGGATCAATTTGTAGAAACTCATACGCCATTGGTGATAATAATGAGAGTTATTACCAT CATAGGGTTTCTCTCAGGATTGTAATGGCTGTCATCGGTTCCGGTTTGGCCGTGTTCGTATCGGTAACCGTGGTTGTTCTTCTGTTTATGATGAGGGAGA GGCAGGAAAAAAACGAAGCCAAATCGGTCGATTTTGACGAAAATGATGAACCAGCGAACGAGAAGCCGACGATATTAGCAAGCAATATCTTCGTCGACAA CTTGAGACAGGCCATCGATGTCGAGTCTGTAGTGAAATCCACGCTCAAGGACTCGAACAAGCTTAGCAGTGGAACGTTCAGCACGGTTTACAAGGCCGTT ATGCCTTCGGGGATGTCATTGTCGGTACGAAAGCTGAAATCGATGGACAGGACCATCGTTCATCATCAGGGCAAGATGATTAGGGAGCTCGAGAGGCTAA GCAAGCTCTCTCACGATAACCTCGTGCAGCCTATCGGATTTGTAGTCTACCAAGATGTTGCTCTCTTGCTGCATAAGTACTTACCGAACGGTACGTTAGG GAAACTGCTGCACGAATCAAGCAAGCTGAGTGATTATAAGCCTGACTGGCCAACGAGGCTCTCCATCGCGACAGGTGTCGCAAGAGGACTGGCTTTCCTT CACAATGTAGCGATCATCCACCTAGATATATCGTCCGGGAATGTCCTCTTGGATGCTGATTTCGAACCCGTGCTTGGTGAGATCGAGATATCGAAACTGC TTGATCCGTCTCGCGGCACTGCAAGCATCAGCGCTGTTGCTGGCTCATTTGGTTATATTCCTCCAGAATATGCGTACACGATGCAAGTTACAGCACCGGG GAACGTGTACAGCTACGGAGTGGTTCTGCTGGAGATCCTCACGACAAGGCTACCGGTAGAGGAAGAATTCGGCGAAGGGGTCGACTTGGTGAAGTGGGTT CATGGTGCACCGGCGAGAGGAGAGACTCCCGAGCAGATACTCGATGCAAAGCTTAGTACAGTCTCGTTCGCGTGGAGGCGAGAAATGGTGGCGGCTCTTA AGGTTGCCTTGCTATGTACCGACGGCACCCCGGCTAAAAGGCCAAAGATGAAGAAGGTTGTGGAGATGCTTGAAGAGATCAGACAAACAAACTGA
AA sequence Show only first row Show all	>Lus10007543 pacid=23148090 polypeptide=Lus10007543 locus=Lus10007543.g ID=Lus10007543.BGIv1.0 annot-version=v1.0 MLKSLNLSNNLLVGKIPDELQKVEKLEELQISSNNLNGSIPLWIGNLTQLKVFTAYENLLTGEIPIPNNLGFFFPELKLLNLHSNQLSGLIPDKLFLHGK LESLILTQNRFKGEIPDSIGKCRSLSSIRIGNNELVGGIPVTIGNLTSLTYFEADSNHLSGEIVSEFSKCLNLTLLNLASNGFTGVIPLELGQLENLQEL ILSENDLYGDIPKSIVGCRSLNKLDLTNNRINGTIPVEICSISRLQYLLLGQNSMRGEIPHEIGSCLKLLEFQIGGNYLVGTIPPEIGHIRNLQIALNLS FNHLHGSVPSELGKLDKLVSLDVSNNQLSGDIPLSLKGMLSLIEVNFSNNLLTGEVPTFVPFQKSPNSSFMGNKGLCGEPLGSICRNSYAIGDNNESYYH HRVSLRIVMAVIGSGLAVFVSVTVVVLLFMMRERQEKNEAKSVDFDENDEPANEKPTILASNIFVDNLRQAIDVESVVKSTLKDSNKLSSGTFSTVYKAV MPSGMSLSVRKLKSMDRTIVHHQGKMIRELERLSKLSHDNLVQPIGFVVYQDVALLLHKYLPNGTLGKLLHESSKLSDYKPDWPTRLSIATGVARGLAFL HNVAIIHLDISSGNVLLDADFEPVLGEIEISKLLDPSRGTASISAVAGSFGYIPPEYAYTMQVTAPGNVYSYGVVLLEILTTRLPVEEEFGEGVDLVKWV HGAPARGETPEQILDAKLSTVSFAWRREMVAALKVALLCTDGTPAKRPKMKKVVEMLEEIRQTN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41820			Leucine-rich repeat protein ki...		Lus10007543 [exp]	0	1
AT3G17900			unknown protein		Lus10013273 [exp]	1.0	0.8539
AT5G25510			Protein phosphatase 2A regulat...		Lus10033069 [exp]	2.0	0.8525
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Lus10002178 [exp]	5.5	0.8270
AT3G19540			Protein of unknown function (D...		Lus10024790 [exp]	6.6	0.8406
AT3G19540			Protein of unknown function (D...		Lus10018707 [exp]	7.3	0.8436
AT4G04860		DER2.2	DERLIN-2.2 (.1)		Lus10007664 [exp]	9.2	0.8203
AT2G41820			Leucine-rich repeat protein ki...		Lus10012193 [exp]	12.7	0.8205
AT5G66560			Phototropic-responsive NPH3 fa...		Lus10041276 [exp]	13.4	0.7490
AT4G27760		FEY3, FEY	FOREVER YOUNG, NAD(P)-binding ...		Lus10009112 [exp]	14.4	0.8143
AT5G59740			UDP-N-acetylglucosamine (UAA) ...		Lus10005881 [exp]	15.9	0.7918

Compare expression of checked genes

Lus10007543 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.