Plant FIBer expression Database

Lus10007544 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G41760 270 / 3e-92 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012191
[exp]
425 / 2e-144 AT5G18070 757 / 0.0 DNA-DAMAGE-REPAIR/TOLERATION 101, phosphoglucosamine mutase-related (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G051500
[exp]
296 / 7e-103 AT2G41760 280 / 1e-96 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0125 Peptidase_CA PF09764 Nt_Gln_amidase N-terminal glutamine amidase
Representative CDS sequence
>Lus10007544 pacid=23148070 polypeptide=Lus10007544 locus=Lus10007544.g ID=Lus10007544.BGIv1.0 annot-version=v1.0
ATGGCGACGGCAGATACGGAAGCGACGAGCAGCAGCAGCGGAACCGTTTCAGAGTTCATCTACACTCCGTATTACTGCGAGGAGAACGTGTACTTTCTCT
GCAAGAAGCTCAGCGAAAACGGGAAGGCGAATAAGGATGGATCTGATCTTTACGCTGTGTTCATCTCCAATGAGAAGAAGCAGATTCCGCTTTGGAATCA
GAAGGCTAGTACACGAGCAGATGGGATTGTGCTGTGGGATTACCATGTCATATGCATCCAGGCGATGTTTGTGCAGAAGAAAAGAGACGATGATTCTTCT
TCAGCATTGGTATGGGACCTGGATTCCTCTCTTCCGTTTCCTTCGCCACTTGATACATATCTGTCTGAGACGATGATGCCATCTTTCGAGCTCTTTTCCG
ACTTTCAGAGGCTGTATCGGGTAGTGCATGCTCCGTTGTTTCTCCGTGAATTTGCATCTGACAGAAGGCACATGAAAGATTCTGCTGGTAACTGGATCAA
TCCACCTCCTTCGTATGAACCCATTGTTGCTAAAGATGGAAGTATTCACAACCTGAATGAGTACATGGATATCAAAGCACCAACTGAAGCAACAACCGAC
GAGTTGTTCGAGATGGCTGCGAGTCAAGGTCAGAAGCATGGGGGGATCATAAAGGAGACTCAGCTCGAGGAGTTTTTCTCAAAATGA
AA sequence
>Lus10007544 pacid=23148070 polypeptide=Lus10007544 locus=Lus10007544.g ID=Lus10007544.BGIv1.0 annot-version=v1.0
MATADTEATSSSSGTVSEFIYTPYYCEENVYFLCKKLSENGKANKDGSDLYAVFISNEKKQIPLWNQKASTRADGIVLWDYHVICIQAMFVQKKRDDDSS
SALVWDLDSSLPFPSPLDTYLSETMMPSFELFSDFQRLYRVVHAPLFLREFASDRRHMKDSAGNWINPPPSYEPIVAKDGSIHNLNEYMDIKAPTEATTD
ELFEMAASQGQKHGGIIKETQLEEFFSK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G41760 unknown protein Lus10007544
[exp]
0 1
AT1G53200 unknown protein Lus10030239
[exp]
9.8 0.8172
AT2G16860 GCIP-interacting family protei... Lus10027466
[exp]
12.1 0.7918
AT3G19184 B3 AP2/B3-like transcriptional fa... Lus10031022
[exp]
16.4 0.7861
Lus10035378
[exp]
30.7 0.7543
AT5G27660 Trypsin family protein with PD... Lus10037815
[exp]
33.3 0.7564
AT1G09150 pseudouridine synthase and arc... Lus10015197
[exp]
36.3 0.8004
AT3G23360 Protein phosphatase 2C family ... Lus10011808
[exp]
47.3 0.7680
AT2G18465 Chaperone DnaJ-domain superfam... Lus10020871
[exp]
52.0 0.7507
AT3G49645 unknown protein Lus10002833
[exp]
74.8 0.7438
AT4G20330 Transcription initiation facto... Lus10005100
[exp]
79.4 0.7304

Lus10007544 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.