Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18070 747 / 0 DRT101 DNA-DAMAGE-REPAIR/TOLERATION 101, phosphoglucosamine mutase-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012191 [exp] 1046 / 0 AT5G18070 757 / 0.0 DNA-DAMAGE-REPAIR/TOLERATION 101, phosphoglucosamine mutase-related (.1) Lus10007548 [exp] 753 / 0 AT5G18070 566 / 0.0 DNA-DAMAGE-REPAIR/TOLERATION 101, phosphoglucosamine mutase-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G146900 [exp] 850 / 0 AT5G18070 750 / 0.0 DNA-DAMAGE-REPAIR/TOLERATION 101, phosphoglucosamine mutase-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02878 [flax] [poplar] PGM_PMM_I Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PF02879 [flax] [poplar] PGM_PMM_II Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PF00408 [flax] [poplar] PGM_PMM_IV Phosphoglucomutase/phosphomannomutase, C-terminal domain PF02880 [flax] [poplar] PGM_PMM_III Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
Representative CDS sequence Show only first row Show all	>Lus10007545 pacid=23148085 polypeptide=Lus10007545 locus=Lus10007545.g ID=Lus10007545.BGIv1.0 annot-version=v1.0 ATGGACGAGCATCAGAATCTTCATCCCCTGATCAACTGCTTTCTTTCAGTTCCCCTCGCAGGAGTGAATCTATCTTATGGGACAGCGGGATTCAGGGCAG ACGCATCGATTCTCCAATCGACGGTTTTTAGGATCGGGATCCTGGCCGCACTTCGATCCCTCAAGACGCAATCGGTGATCGGGCTGATGATCACAGCTTC CCACAACCAAGTCAGCGACAATGGGATCAAAATCGCCGACCCTAGTGGTGGAATGCTCACTCAGGAATGGGAGCCGTTCGCTGACTCCATCGCCAATGCC CCAACTCCGCAGGAGCTGCTGCAATTGGTGGAGGAATTCGTCAAGAATGAAGGAATTCGATTTGATGGACCCCGAAATGCGGAGATACTTCTGGGGAGAG ACACCAGGCCCAGCGGGGAATCTCTTCTTGAAGCTGCAAAAAAAGGAATTTGTTCAATTGTTGGAGCCAACGTTATTGACATGGGGATTGTGACAACTCC ACAGCTTCATTGGATGGTTCGTGCTCAGAACAAGGGTTTGAAAGCAACTGAGCTTGATTACTTTGAACAACTTTTATCCTCCTTCAGGTGCTTGCTTGAT CTGATTCCAAGTGAAAACAAAGTGAACAAGGTTGATAACAAGTTGGTGGTGGATGGAGCTAATGGGGTTGGGGGAGAGAAGCTTGAAGGTTTAGCAAAGT CTTTGGATGGTTTGAATATTGAAATACGTAATTCTGGGAAAGGGGTGCTAAACGAAGGAGTTGGTGCTGATTATGTGCAGAAGGAGAAGATTCTTCCGCT GGAATTTGGTACTAAAGATGTTGGGACAAGATGTGCAAGTTTGGACGGAGATGCTGACCGGCTTGTGTATTTCTCAGTGCCTTCTGAAAATAGTAACAAA GTTGAGCTCGTAGATGGGGACAAAATTCTATCTCTGTTTGCTGTATTCATCAAGAGTCAATTAAGCATATTGAATGAGTCGGAAGATACTTACCAGGCTC GCCTTGGTGTGGTACAAACAGCTTATGCAAACGGAGCATCCACTAATTACCTCAGACAATTAGGTCTGGAAGTTGTCTTCACCCCAACTGGAGTGAAATA CCTGCATGAAAAAGCAGCACACTATTATGTTGGAATCTATTTCGAAGCAAATGGACATGGAACCATCCTGTTCTCCGACAGCTTCTTGTCGTGGTTAGAA GCTAAGAATAACAAGCTTGATTCCAAATCTAAAGGCTCTGAAGAGCATAAAGCTGTATTAAGATTGTTGGCGGTTAGTAATCTGATCAACCAAGCCGTTG GAGATGCTTTAAGTGGGTTGCTCTTGGTGGAAGCTATCTTACTGCACATGGGGTGGTCGATATGCAACTGGAACGAGCTTTACCAGGATTTGCCTAGCAG GCAGCTGAAGGTCAAAGTTGTAGATAGAACTGCTGTCAAAACAGCTAATGCAGAGACTGTTGCTGTGCAGCCACCTGGAATTCAAGAAGCTATTAATGCC GAAACTGTGAAATATCCAAACGGACGATGTTTCATAAGGCCTTCTGGTACAGAGGATGTGATTCGAGTATACGCGGAAGCATCGACACAAGAAGCAGCGG ATAGCCTTGCCAACTCGGTGGGCAGAATCGTGGATAGATTCCTAGGATCTGGAAGCAACTAA
AA sequence Show only first row Show all	>Lus10007545 pacid=23148085 polypeptide=Lus10007545 locus=Lus10007545.g ID=Lus10007545.BGIv1.0 annot-version=v1.0 MDEHQNLHPLINCFLSVPLAGVNLSYGTAGFRADASILQSTVFRIGILAALRSLKTQSVIGLMITASHNQVSDNGIKIADPSGGMLTQEWEPFADSIANA PTPQELLQLVEEFVKNEGIRFDGPRNAEILLGRDTRPSGESLLEAAKKGICSIVGANVIDMGIVTTPQLHWMVRAQNKGLKATELDYFEQLLSSFRCLLD LIPSENKVNKVDNKLVVDGANGVGGEKLEGLAKSLDGLNIEIRNSGKGVLNEGVGADYVQKEKILPLEFGTKDVGTRCASLDGDADRLVYFSVPSENSNK VELVDGDKILSLFAVFIKSQLSILNESEDTYQARLGVVQTAYANGASTNYLRQLGLEVVFTPTGVKYLHEKAAHYYVGIYFEANGHGTILFSDSFLSWLE AKNNKLDSKSKGSEEHKAVLRLLAVSNLINQAVGDALSGLLLVEAILLHMGWSICNWNELYQDLPSRQLKVKVVDRTAVKTANAETVAVQPPGIQEAINA ETVKYPNGRCFIRPSGTEDVIRVYAEASTQEAADSLANSVGRIVDRFLGSGSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18070		DRT101	DNA-DAMAGE-REPAIR/TOLERATION 1...		Lus10007545 [exp]	0	1
AT2G45880	BZR	BAM7, BMY4	BETA-AMYLASE 4, beta-amylase 7...		Lus10017820 [exp]	12.6	0.6994
AT3G46750			unknown protein		Lus10004979 [exp]	42.4	0.6334
AT5G15010			Tetratricopeptide repeat (TPR)...		Lus10042530 [exp]	76.0	0.6103

Compare expression of checked genes

Lus10007545 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.