Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001200 [exp] 57 / 2e-08 AT3G46970 1377 / 0.0 Arabidopsis thaliana alpha-glucan phosphorylase 2, alpha-glucan phosphorylase 2 (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007546 pacid=23148093 polypeptide=Lus10007546 locus=Lus10007546.g ID=Lus10007546.BGIv1.0 annot-version=v1.0 ATGGCTCTTCATGAAACATATTCATTGGCTCAAATCTTCCAATGGGAAGACAACTGTTATTTCTTTCACTTCCACGGTGCGACATGGAGACTGGGGGAAA ATGGTAACGCATTTATTAGAAAGTTGTATGAAATCGTCCGCCGACGACATCTGGTTTCAGAATATATTGTGCACGGTCAACAACCTATAAATGCTCGGGA TGTATATGTGACATTCAGGCTGCCAGATTATCTCCTTATCCAGGTGGACTTGAGACACCATCATTTTATGACCATAAATATTACAGATGGAACGAGGAAC ATTTGTCTTAATAGGTGTCAGGATGACTTCATTGCCCTCTGCAATATTACTAATCAATGGATTCTAAATTGCACTCCCGGACAACATTCTGCATCTCCTG ATATCAAGAATTTCTTACAACTAATCCAAGCTCCCACTCCAGATATTATAGCAAGAGGATTGGCATTTCATATGCATTACTATGGGGCGAGGATTTGTTC GCACCCATGTCTGTGGGAGGATGACACCACTGCGGATTTTATAATTTATTTATATGCCCGCGAGCGAGATGAACCAGAGTTGCGTCGGTTAATTCAAAAT TGCTGGACTTTTAATCCTTCAATCTATAATGAGATATGGGCAATGCATTGGGAACAAAGGGTCAAGACCTTCTATGAAAATGTTATAACAGCTGCTCGAA ACAATGGACTAGAACTCTTCAACTATCATCGTGGGATGCGGGTGTTTCTTTATATACGATCGACATTAATGCATACAATGGATGACGATCGTATGCGAGA TTTCGATCTAAAGACAGCAAGAGAACAAATTCTTTTGGAACTATTAGATTTGTTCCCTGGTTTTATGTCTCGTTTGGTAAGAGCATGTTTTCACTACGAA GGGATCCAAGGTAACTGCCACAATAAGGATGGTCGGTCTTCGGAGTTGAGGGACTTGATCAGCTGTTGCACCAAAGAGGAAGAAGTTATCCTCTCCTACT TCCTCCCTGATTTCAACACTCGCCCCCGTCGCTGTGCTGATATGCTGTGA
AA sequence Show only first row Show all	>Lus10007546 pacid=23148093 polypeptide=Lus10007546 locus=Lus10007546.g ID=Lus10007546.BGIv1.0 annot-version=v1.0 MALHETYSLAQIFQWEDNCYFFHFHGATWRLGENGNAFIRKLYEIVRRRHLVSEYIVHGQQPINARDVYVTFRLPDYLLIQVDLRHHHFMTINITDGTRN ICLNRCQDDFIALCNITNQWILNCTPGQHSASPDIKNFLQLIQAPTPDIIARGLAFHMHYYGARICSHPCLWEDDTTADFIIYLYARERDEPELRRLIQN CWTFNPSIYNEIWAMHWEQRVKTFYENVITAARNNGLELFNYHRGMRVFLYIRSTLMHTMDDDRMRDFDLKTAREQILLELLDLFPGFMSRLVRACFHYE GIQGNCHNKDGRSSELRDLISCCTKEEEVILSYFLPDFNTRPRRCADML

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10007546 [exp]	0	1
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10000558 [exp]	4.4	1.0000
AT3G51590		LTP12	lipid transfer protein 12 (.1)		Lus10004067 [exp]	6.2	1.0000
AT1G17930			Aminotransferase-like, plant m...		Lus10005482 [exp]	7.5	1.0000
					Lus10011636 [exp]	8.7	1.0000
AT3G16970			Plant self-incompatibility pro...		Lus10011753 [exp]	9.7	1.0000
AT1G30950		UFO	UNUSUAL FLORAL ORGANS, F-box f...		Lus10018690 [exp]	10.5	0.9923
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10011892 [exp]	10.7	1.0000
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10022473 [exp]	11.5	1.0000
AT3G58780	MADS	AGL1, SHP1	SHATTERPROOF 1, AGAMOUS-like 1...		Lus10029275 [exp]	11.7	0.9940
AT4G10950			SGNH hydrolase-type esterase s...		Lus10023070 [exp]	12.3	1.0000

Compare expression of checked genes

Lus10007546 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.