Plant FIBer expression Database

Lus10007549 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10007549 pacid=23148096 polypeptide=Lus10007549 locus=Lus10007549.g ID=Lus10007549.BGIv1.0 annot-version=v1.0
ATGGAGCAGTATCTCAATCTAGATGAGAGGCCAGTCAGTTTAGTTGAAAATATTACAATCCAAGGGCATCCTACTGTCTCCGCTAATGTTTTGACCGAGA
ATGGTCGGATTTTGATAAGATCCGTTCTGAATCAATTGACATGCTGGCACATTTATGGTCAAGCATATCTACCCATATCCATACACACGATCCATACAAG
AACAATCGCAACTCCCGATAAACAGTATTTCCAAGTGGAGTTAAGACGACATGCACAACAGAACGTACTGAAAACAGAGGTAGATCCGTGGCGCAGGTTG
TACAGAAGTCTGATAGGACTTAAAGAATCTATCAGTGAGTTGCTGTTTCGACAGAGGAACGCTATACCATCAGACTTCTACTTTGCTCAAAGCCTACCCA
AAGACCTGGAGCATTGGCTCAAATTAATCAGGGGACAGAAGTGGGATCATTTGATTCTCATATTAGGGCATCCTTGCACTTTTAGTTGGTACGAACAAGT
GAACGTTATAAACACCTTGTGTTTTCGACGCAACACTCGTCGCTCGTTCCAAATGAAGACTAGGAGAATACCACTGCAGTATTTGGAGGATTGGACATTT
AGGTGGCACTTGAACATGACTAACCAGATGTATAAAGAACCACTTGCATATGATCAAGATGTATTATATCAATTGAGGGGTTCATTTGAGCACTGCCAGG
TAGTTCATGTGAATCTTCCGGCTGGAGAAGAGCCAGAATTGCTTAGAGTGGCTAAGAAGATGCACTGCATCTTCCCCGATTTCCTGAGCATGTATTTTGA
ATGTACAACCGGATCGAAACGCTTAGTGTCCTTTTGCAATGGACAGTTGCGTAAAGCAATAAATAGAGGTGACCCGATGATAGTAGATGATGATGATGAT
GATGGCGGCTTTTGA
AA sequence
>Lus10007549 pacid=23148096 polypeptide=Lus10007549 locus=Lus10007549.g ID=Lus10007549.BGIv1.0 annot-version=v1.0
MEQYLNLDERPVSLVENITIQGHPTVSANVLTENGRILIRSVLNQLTCWHIYGQAYLPISIHTIHTRTIATPDKQYFQVELRRHAQQNVLKTEVDPWRRL
YRSLIGLKESISELLFRQRNAIPSDFYFAQSLPKDLEHWLKLIRGQKWDHLILILGHPCTFSWYEQVNVINTLCFRRNTRRSFQMKTRRIPLQYLEDWTF
RWHLNMTNQMYKEPLAYDQDVLYQLRGSFEHCQVVHVNLPAGEEPELLRVAKKMHCIFPDFLSMYFECTTGSKRLVSFCNGQLRKAINRGDPMIVDDDDD
DGGF

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10007549
[exp]
0 1
AT5G63090 AS2 LOBB, LOB Lateral organ boundaries (LOB)... Lus10011906
[exp]
2.0 0.9913
AT5G14070 ROXY2 Thioredoxin superfamily protei... Lus10011333
[exp]
2.8 0.9890
AT5G67460 O-Glycosyl hydrolases family 1... Lus10002466
[exp]
4.2 0.9861
AT2G45480 GRF ATGRF9 growth-regulating factor 9 (.1... Lus10038002
[exp]
4.9 0.9843
Lus10015654
[exp]
4.9 0.9881
AT5G48090 ELP1 EDM2-like protein1 (.1.2) Lus10002268
[exp]
5.5 0.9837
AT1G71691 GDSL-like Lipase/Acylhydrolase... Lus10009457
[exp]
5.7 0.9833
AT2G45480 GRF ATGRF9 growth-regulating factor 9 (.1... Lus10009234
[exp]
5.8 0.9820
AT1G71691 GDSL-like Lipase/Acylhydrolase... Lus10001540
[exp]
6.0 0.9842
AT3G05600 alpha/beta-Hydrolases superfam... Lus10029878
[exp]
6.5 0.9889

Lus10007549 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.