Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028759 [exp] 195 / 3e-57 AT1G63970 290 / 2e-96 2C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE, isoprenoid F (.1.2) Lus10041379 [exp] 60 / 1e-09 AT2G45690 386 / 9e-133 SHRUNKEN SEED 1, ARABIDOPSIS PEROXIN 16, shrunken seed protein (SSE1) (.1) Lus10006086 [exp] 54 / 2e-07 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007551 pacid=23148103 polypeptide=Lus10007551 locus=Lus10007551.g ID=Lus10007551.BGIv1.0 annot-version=v1.0 ATGTCGTTGTTGATCGGAAGCAGCAGCAGCTCTTGTGAATCTGGGTCGCCGGATCATAAGAAGCAGCGAATAGAAGAAGAAGAAAGGTTTGATTTTAAGG ATGGTGATATGTGCGGAGTAGTTTTTGGTTGCGGTGATAGCCGCGTGAAAGTTGGGCTGATGAATCTCAGGTCTGACGAACAAATCCAACCATTGCAAAT ATACACCGTCGCCGCTCCGAAGAACGTGAACACTGATTTCAGTGTCGACTGGGGATTCATTGTCGTAGAGTCCAAACTGTACGCTACAGGGGGTCAAGTT AACTATATCGGCGAGTTCCATCCCTGGGGCGATCCATATTTCCACTTCACACGAGAGGTATATTTCTGTGATCTCCGAGACGCATTTACTAATAATAATT CTGAGCGTTGTCTGGAATTCAAGGTAGTAGCCACTCTGAATTCGCCAAAGAGATATCCTCTTGTTGTTCCTTACAAGGATAAGATTTTCTTCATCGCAAA ACCTACACGCTCTAATTACTACACTCCTTGCGAGATTTTGCATCGGTCGGATGGTGATCAGTTTAAAGTTGAGCCTCTTACCACTCCCAAGTTTTGGAAA TATGATTCTTATCCTTCTAGATGGAGAGGAACTGAACTCGATGCTCATGTAGTTATAAGGAATAAATTGTATGTTCGTGTTTGTTCTCCAAAACGAGATG ACCAGCTCACTTTACACTGTCTTGACATGGATGCTCAAGACTGGGAAGAAGCAGAAGAAGAAGAAGACTGTGCTGTTCCACACATCTTAAAAGAGGTTTA TCAACATCCAGATAGGCTACCTTTCAATTTTGTTCACGTTGATAAACTATTCTCGCTGAAGTTGGACGGGGAGGATCCCTCAGTTCCTTTCTTGAGTGTT GAGATTTTCAATGGTGTTGGTAAGTTTGTTGTTGATCTCAAAGGTGTAGTTGATTCTATGGGGTTGGAAGGATGCTGCTATGTAATGAATGGATGGGTCA TTCCCTGGGAAGAGAAAACCAGTGATGTGTTTTATCTCATGCTTTACCTAAAAAACATGGCTGGAGGAAGCAAATATATGACCTACTTCTGCTTTTGCAA GTTTAAATTGGCTGATAACGGGTCGTTCGAGGTTTCAACAAGGAGAGTTATTTGTGGTCCATTTTTAGAGGATAATAAGAGGCTTATGATTAGCTTCACC CCTGCCAACACCAAAGTACTGCATTTGGGTGATTATGAAAGTAAACTATACGACAGAGATCGCAAGCTATTGGTGGCAAAGGCCTTGAAGGAGAAAGGTG AAGCAACGAGAATGTAG
AA sequence Show only first row Show all	>Lus10007551 pacid=23148103 polypeptide=Lus10007551 locus=Lus10007551.g ID=Lus10007551.BGIv1.0 annot-version=v1.0 MSLLIGSSSSSCESGSPDHKKQRIEEEERFDFKDGDMCGVVFGCGDSRVKVGLMNLRSDEQIQPLQIYTVAAPKNVNTDFSVDWGFIVVESKLYATGGQV NYIGEFHPWGDPYFHFTREVYFCDLRDAFTNNNSERCLEFKVVATLNSPKRYPLVVPYKDKIFFIAKPTRSNYYTPCEILHRSDGDQFKVEPLTTPKFWK YDSYPSRWRGTELDAHVVIRNKLYVRVCSPKRDDQLTLHCLDMDAQDWEEAEEEEDCAVPHILKEVYQHPDRLPFNFVHVDKLFSLKLDGEDPSVPFLSV EIFNGVGKFVVDLKGVVDSMGLEGCCYVMNGWVIPWEEKTSDVFYLMLYLKNMAGGSKYMTYFCFCKFKLADNGSFEVSTRRVICGPFLEDNKRLMISFT PANTKVLHLGDYESKLYDRDRKLLVAKALKEKGEATRM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10007551 [exp]	0	1
AT4G32050			neurochondrin family protein (...		Lus10001536 [exp]	4.0	0.8286
AT4G23840			Leucine-rich repeat (LRR) fami...		Lus10003886 [exp]	4.7	0.8028
AT5G18070		DRT101	DNA-DAMAGE-REPAIR/TOLERATION 1...		Lus10007548 [exp]	6.7	0.7741
AT4G10940			RING/U-box protein (.1)		Lus10001535 [exp]	9.2	0.7812
AT1G60990			Glycine cleavage T-protein fam...		Lus10020818 [exp]	10.4	0.7710
AT1G11340			S-locus lectin protein kinase ...		Lus10006745 [exp]	11.7	0.7770
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Lus10008947 [exp]	14.7	0.7625
					Lus10016313 [exp]	15.2	0.6826
AT1G78960		ATLUP2	lupeol synthase 2 (.1)		Lus10016439 [exp]	19.0	0.7273
AT2G40116			Phosphoinositide-specific phos...		Lus10009894 [exp]	22.2	0.7233

Compare expression of checked genes

Lus10007551 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.