Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45600 428 / 3e-153 TAF14b, GAS41 TBP-ASSOCIATED FACTOR 14B, GLIOMAS 41, YEATS family protein (.1.2) AT2G18000 295 / 9e-101 TAF14 TBP-associated factor 14 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012188 [exp] 532 / 0 AT5G45600 408 / 1e-144 TBP-ASSOCIATED FACTOR 14B, GLIOMAS 41, YEATS family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G164500 [exp] 430 / 7e-154 AT5G45600 411 / 1e-146 TBP-ASSOCIATED FACTOR 14B, GLIOMAS 41, YEATS family protein (.1.2) Potri.009G126200 [exp] 402 / 3e-143 AT5G45600 379 / 4e-134 TBP-ASSOCIATED FACTOR 14B, GLIOMAS 41, YEATS family protein (.1.2) Potri.007G012700 [exp] 325 / 1e-112 AT5G45600 339 / 5e-118 TBP-ASSOCIATED FACTOR 14B, GLIOMAS 41, YEATS family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF03366 [flax] [poplar] YEATS YEATS family
Representative CDS sequence Show only first row Show all	>Lus10007555 pacid=23148068 polypeptide=Lus10007555 locus=Lus10007555.g ID=Lus10007555.BGIv1.0 annot-version=v1.0 ATGATGAACAGCTCGTCGCCGAAAAGGAACGATCAGGATCCGCCTGAAACCAGTGCTCCCGTGATCAAATCTCTGAAAACCAAGCTCAGCAAGCCCGAAG ATGCCGACAAGAAGATCGGGAGCAAGAAGTTCAAAGATGTTGAGGTTGGAGTTCCTATTGTGTATGGAAATATTGCATTCTGGCTTGGTAAGAAGGCAAA TGAATATCAATCTCATAAGTGGACGGTATATGTACGAGGGGCTAGTAATGAGGATATCAGTGTAGCGGTAAAGAAGGTTGTTTTCCAGCTTCATACTAGT TTTAATAATCCGACAAGAGTAGTAGAATCACCACCATTTGAGTTATCAGAGCAAGGTTGGGGAGAATTCGAGATTGCTATAACTCTCCACTTCCATAGTG ATGTTTGTGAGAAGCCCTTAAACTTATATCACCAATTGAAGTTGTACCCAGAAGATGAATCTACGACGTTGTCGATTAAGAAGCCGGTTGTGGTAGAATC CTATGACGAGGTTGTTTTTCCTGAGCCTTCTGAGAGCTTTTTGGCTCGGGCACAGAATCATCCAGCTGTGAGCATGCCTAGATTGCCTGCTGGTTTTACT TTACCTGCTCCTGTCGAAGACACAAGTGAAAGGAAGAGATGTGACACTAAGGACAACCCACTAAACCAATGGTTCATGAATTTTTCTGAAGCAGATGAGT TGTTAAAACTTGCTGCAGCACGACAGCAGGTGCAAGCTCATATCGCGAAACTCAGACGACAGATAATCGTGATAGAAGGACAGAATCAGCAGTTGAAGCC TTCCTCTGACCAGTGA
AA sequence Show only first row Show all	>Lus10007555 pacid=23148068 polypeptide=Lus10007555 locus=Lus10007555.g ID=Lus10007555.BGIv1.0 annot-version=v1.0 MMNSSSPKRNDQDPPETSAPVIKSLKTKLSKPEDADKKIGSKKFKDVEVGVPIVYGNIAFWLGKKANEYQSHKWTVYVRGASNEDISVAVKKVVFQLHTS FNNPTRVVESPPFELSEQGWGEFEIAITLHFHSDVCEKPLNLYHQLKLYPEDESTTLSIKKPVVVESYDEVVFPEPSESFLARAQNHPAVSMPRLPAGFT LPAPVEDTSERKRCDTKDNPLNQWFMNFSEADELLKLAAARQQVQAHIAKLRRQIIVIEGQNQQLKPSSDQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45600		TAF14b, GAS41	TBP-ASSOCIATED FACTOR 14B, GLI...		Lus10007555 [exp]	0	1
AT5G40530			S-adenosyl-L-methionine-depend...		Lus10022276 [exp]	1.4	0.8979
AT3G57000			nucleolar essential protein-re...		Lus10032053 [exp]	2.2	0.9066
AT1G60560			SWIM zinc finger family protei...		Lus10025765 [exp]	4.0	0.8588
AT3G54170		ATFIP37	FKBP12 interacting protein 37 ...		Lus10039948 [exp]	4.5	0.8768
AT5G61460		SMC6B, ATRAD18,...	STRUCTURAL MAINTENANCE OF CHRO...		Lus10027219 [exp]	4.5	0.8835
AT1G73350			unknown protein		Lus10042294 [exp]	4.9	0.8912
AT3G11730		ATFP8, AtRABD1	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10041117 [exp]	5.1	0.8341
AT2G27970		CKS2	CDK-subunit 2 (.1)		Lus10041349 [exp]	5.7	0.8517
AT1G79030			Chaperone DnaJ-domain superfam...		Lus10043089 [exp]	6.7	0.8459
AT1G67230		CRWN1, LINC1	CROWDED NUCLEI 1, little nucle...		Lus10003074 [exp]	6.7	0.8561

Compare expression of checked genes

Lus10007555 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.