Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44525 262 / 1e-90 Protein of unknown function (DUF498/DUF598) (.1) AT3G60150 260 / 7e-90 Protein of unknown function (DUF498/DUF598) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007558 [exp] 362 / 3e-130 AT2G44525 262 / 1e-90 Protein of unknown function (DUF498/DUF598) (.1) Lus10012187 [exp] 357 / 3e-128 AT2G44525 259 / 1e-89 Protein of unknown function (DUF498/DUF598) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G179500 [exp] 289 / 3e-101 AT2G44525 265 / 5e-92 Protein of unknown function (DUF498/DUF598) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04430 [flax] [poplar] DUF498 Protein of unknown function (DUF498/DUF598)
Representative CDS sequence Show only first row Show all	>Lus10007556 pacid=23148106 polypeptide=Lus10007556 locus=Lus10007556.g ID=Lus10007556.BGIv1.0 annot-version=v1.0 ATGACTGTGAGGCAACGGGCAGTGACGGCTTTGCCAAAGCTCATACAAAGCCTGCGTAAGGAATGCCCGAGACCCGCTCCGCTACTCTCAGCAACTAGTC AATCTACGCAGCTCCCATCTCTCAGACGTGCATTCTCTCTTTACGATCAGATCAATCTCATCGATAATGTCCCCGAAGACCAGCTCCGGTTCCAGAATTA TACAGACACTGGATTTACGGTGAACGGGGTACAGTATGAAGGGAGCTTGCTATGCATTGGCAACTTGCTGATGTCGTGGACTCCCAAAACGATCCCGCAA ATCACTCCAGAGAGTTTATCCATCTTCAAAATCGTTCGGCCTGTTCCAGAGATCTTGATTCTTGGGTGTGGAAGATACATTCAGCCTGTAGATCCTGAAC TCAGGCAGTTCATCCGGTCCACTGGCATGAAGCTAGAAGCAGTTGACTCGAGGAACGCTGCTACAACTTACAACATACTCAACGAGGAAGGACGAATGGT GGCTGTTGCCCTTCTCCCATACGGAGTCTCTTCGTAA
AA sequence Show only first row Show all	>Lus10007556 pacid=23148106 polypeptide=Lus10007556 locus=Lus10007556.g ID=Lus10007556.BGIv1.0 annot-version=v1.0 MTVRQRAVTALPKLIQSLRKECPRPAPLLSATSQSTQLPSLRRAFSLYDQINLIDNVPEDQLRFQNYTDTGFTVNGVQYEGSLLCIGNLLMSWTPKTIPQ ITPESLSIFKIVRPVPEILILGCGRYIQPVDPELRQFIRSTGMKLEAVDSRNAATTYNILNEEGRMVAVALLPYGVSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44525			Protein of unknown function (D...		Lus10007556 [exp]	0	1
AT3G58730			vacuolar ATP synthase subunit ...		Lus10027271 [exp]	13.0	0.7071
AT5G27450		MVK, MK	mevalonate kinase (.1.2.3)		Lus10031513 [exp]	15.6	0.7511
AT5G35620		eIFiso4E, EIF(I...	LOSS OF SUSCEPTIBILITY TO POTY...		Lus10011776 [exp]	17.0	0.7601
AT1G04280			P-loop containing nucleoside t...		Lus10022217 [exp]	18.6	0.6868
AT4G35090		CAT2	catalase 2 (.1.2)		Lus10016017 [exp]	28.6	0.6503
AT5G21050			unknown protein		Lus10019547 [exp]	38.3	0.6743
AT4G22330		ATCES1	Alkaline phytoceramidase (aPHC...		Lus10043146 [exp]	38.4	0.6772
AT5G28840		GME	"GDP-D-mannose 3',5'-epimerase...		Lus10015915 [exp]	39.8	0.6907
AT2G17390		AKR2B	ankyrin repeat-containing 2B (...		Lus10013859 [exp]	47.6	0.6657
AT2G13690			PRLI-interacting factor, putat...		Lus10033484 [exp]	50.9	0.5960

Compare expression of checked genes

Lus10007556 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.