Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20920 188 / 1e-59 EIF2 BETA, EMB1401, EIF2BETA embryo defective 1401, eukaryotic translation initiation factor 2 beta subunit (.1.2.3) AT3G07920 63 / 3e-12 Translation initiation factor IF2/IF5 (.1) AT5G01940 59 / 1e-10 eukaryotic translation initiation factor 2B family protein / eIF-2B family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007559 [exp] 341 / 1e-119 AT5G20920 385 / 3e-136 embryo defective 1401, eukaryotic translation initiation factor 2 beta subunit (.1.2.3) Lus10012186 [exp] 298 / 1e-102 AT5G20920 373 / 3e-131 embryo defective 1401, eukaryotic translation initiation factor 2 beta subunit (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G158400 [exp] 207 / 2e-67 AT5G20920 396 / 7e-141 embryo defective 1401, eukaryotic translation initiation factor 2 beta subunit (.1.2.3) Potri.019G131200 [exp] 204 / 4e-66 AT5G20920 399 / 7e-142 embryo defective 1401, eukaryotic translation initiation factor 2 beta subunit (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF01873 [flax] [poplar] eIF-5_eIF-2B Domain found in IF2B/IF5
Representative CDS sequence Show only first row Show all	>Lus10007557 pacid=23148079 polypeptide=Lus10007557 locus=Lus10007557.g ID=Lus10007557.BGIv1.0 annot-version=v1.0 ATGGCCATTCCGGTTTTCACTTTAATCATTGTGCGATTCGCCATTTCTTATGCAGCAATCATGGCTGACGAAGAACACGCCGAGATTCCCGAACTCGCAC CATTCGATCCTACCAAGAAGAAGAAGAAGAAGAAAGTCGTGATACAGGATATTGCTGACGAGCCAGTGGAAAAAGCGGCTGAGAAAACTGAATTATTGTC AGTTGCAGATGGGGTTGAAAGCTCGTTTTCGGGTTTGAAAAAGAAGAAGAAGAAGCCTGTTGAAACTAGACTTCTGAATGAAGAAACTGGTGATGCCGAA GAAGATGTGGATGACCATGTGCCAGAAGAAGCTGAAGGGGAAGACGGCGCTGCACTGCAGAACCGTTATCCGTGGGAGAGGAGTGATCGTGATTATTACT ATTCAGAGCTTATTGATAGGGTTTATGAGAATTTGCGTGAGAATAATCCGGAGCTTTCAGGAGATAGGCGTAGGACTGTTATGAGGCCTCCACAGGTTCT TCGTGAAGGGACAAAGAAGACTGTGTTTGCAAACTTCATGGACCTTTGCAAGAGGTATCTGCTTGTGCATTTTCTCATTGACGCTCATGTATCATGCTTC CTTGTCTACTATATTGAATACTGTCACTCCTGTTCCCTGTAA
AA sequence Show only first row Show all	>Lus10007557 pacid=23148079 polypeptide=Lus10007557 locus=Lus10007557.g ID=Lus10007557.BGIv1.0 annot-version=v1.0 MAIPVFTLIIVRFAISYAAIMADEEHAEIPELAPFDPTKKKKKKKVVIQDIADEPVEKAAEKTELLSVADGVESSFSGLKKKKKKPVETRLLNEETGDAE EDVDDHVPEEAEGEDGAALQNRYPWERSDRDYYYSELIDRVYENLRENNPELSGDRRRTVMRPPQVLREGTKKTVFANFMDLCKRYLLVHFLIDAHVSCF LVYYIEYCHSCSL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20920		EIF2 BETA, EMB1...	embryo defective 1401, eukaryo...		Lus10007557 [exp]	0	1
AT5G26760			unknown protein		Lus10022386 [exp]	59.0	0.6944
AT4G31180			Class II aminoacyl-tRNA and bi...		Lus10018862 [exp]	60.1	0.6579
AT5G27850			Ribosomal protein L18e/L15 sup...		Lus10029879 [exp]	94.2	0.6819
AT3G18860			transducin family protein / WD...		Lus10040490 [exp]	276.9	0.6129
AT3G19260		LOH2, LAG1 HOMO...	LONGEVITY ASSURANCE GENE1 HOMO...		Lus10019859 [exp]	289.9	0.6129

Compare expression of checked genes

Lus10007557 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.