Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44525 262 / 1e-90 Protein of unknown function (DUF498/DUF598) (.1) AT3G60150 260 / 7e-90 Protein of unknown function (DUF498/DUF598) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007556 [exp] 362 / 3e-130 AT2G44525 262 / 1e-90 Protein of unknown function (DUF498/DUF598) (.1) Lus10012187 [exp] 357 / 3e-128 AT2G44525 259 / 1e-89 Protein of unknown function (DUF498/DUF598) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G179500 [exp] 289 / 3e-101 AT2G44525 265 / 5e-92 Protein of unknown function (DUF498/DUF598) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04430 [flax] [poplar] DUF498 Protein of unknown function (DUF498/DUF598)
Representative CDS sequence Show only first row Show all	>Lus10007558 pacid=23148087 polypeptide=Lus10007558 locus=Lus10007558.g ID=Lus10007558.BGIv1.0 annot-version=v1.0 ATGACTGTGAGGCAACGGGCAGTGACGGCTTTGCCAAAGCTCATACAAAGCCTGCGTAAGGAATGCCCGAGACCCGCTCCGCTACTCTCAGCAACTAGTC AATCTACGCAGCTCCCATCTCTCAGACGTGCATTCTCTCTTTACGATCAGATCAATCTCATCGATAATGTCCCCGAAGACCAGCTCCGGTTCCAGAATTA TACAGACACTGGATTTACGGTGAACGGGGTACAGTATGAAGGGAGCTTGCTATGCATTGGCAACTTGCTGATGTCGTGGACTCCCAAAACGATCCCGCAA ATCACTCCAGAGAGTTTATCCATCTTCAAAATCGTTCGGCCTGTTCCAGAGATCTTGATTCTTGGGTGTGGAAGATACATTCAGCCTGTAGATCCTGAAC TCAGGCAGTTCATCCGGTCCACTGGCATGAAGCTAGAAGCAGTTGACTCGAGGAACGCTGCTACAACTTACAACATACTCAACGAGGAAGGACGAATGGT GGCTGTTGCCCTTCTCCCATACGGAGTCTCTTCGTAA
AA sequence Show only first row Show all	>Lus10007558 pacid=23148087 polypeptide=Lus10007558 locus=Lus10007558.g ID=Lus10007558.BGIv1.0 annot-version=v1.0 MTVRQRAVTALPKLIQSLRKECPRPAPLLSATSQSTQLPSLRRAFSLYDQINLIDNVPEDQLRFQNYTDTGFTVNGVQYEGSLLCIGNLLMSWTPKTIPQ ITPESLSIFKIVRPVPEILILGCGRYIQPVDPELRQFIRSTGMKLEAVDSRNAATTYNILNEEGRMVAVALLPYGVSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44525			Protein of unknown function (D...		Lus10007558 [exp]	0	1
					Lus10001992 [exp]	4.0	0.6812
AT5G53840			F-box/RNI-like/FBD-like domain...		Lus10014161 [exp]	6.0	0.6339
AT1G72200			RING/U-box superfamily protein...		Lus10036466 [exp]	13.8	0.6612
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Lus10031590 [exp]	24.2	0.6542
AT5G50090			unknown protein		Lus10042139 [exp]	30.8	0.6202
AT1G74340		DPMS2, DPMS	dolichol phosphate mannose syn...		Lus10035381 [exp]	35.7	0.5569
AT1G59640	bHLH	ZCW32, bHLH031...	BIG PETAL UB, BIG PETAL P (.1....		Lus10030807 [exp]	54.6	0.5877
AT1G69990			Leucine-rich repeat protein ki...		Lus10041486 [exp]	68.0	0.5834
AT2G21250			NAD(P)-linked oxidoreductase s...		Lus10042054 [exp]	69.2	0.5648
AT5G27260			unknown protein		Lus10035759 [exp]	76.3	0.5865

Compare expression of checked genes

Lus10007558 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.