Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20920 381 / 2e-134 EIF2 BETA, EMB1401, EIF2BETA embryo defective 1401, eukaryotic translation initiation factor 2 beta subunit (.1.2.3) AT3G07920 202 / 2e-65 Translation initiation factor IF2/IF5 (.1) AT5G01940 152 / 5e-45 eukaryotic translation initiation factor 2B family protein / eIF-2B family protein (.1) AT1G36730 54 / 4e-08 Translation initiation factor IF2/IF5 (.1) AT1G77840 53 / 1e-07 Translation initiation factor IF2/IF5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012186 [exp] 498 / 3e-180 AT5G20920 373 / 3e-131 embryo defective 1401, eukaryotic translation initiation factor 2 beta subunit (.1.2.3) Lus10007557 [exp] 342 / 1e-119 AT5G20920 192 / 2e-61 embryo defective 1401, eukaryotic translation initiation factor 2 beta subunit (.1.2.3) Lus10002283 [exp] 57 / 4e-09 AT1G36730 505 / 6e-178 Translation initiation factor IF2/IF5 (.1) Lus10004057 [exp] 57 / 5e-09 AT1G36730 505 / 4e-178 Translation initiation factor IF2/IF5 (.1) Lus10010981 [exp] 52 / 4e-08 AT1G36730 282 / 3e-95 Translation initiation factor IF2/IF5 (.1) Lus10000448 [exp] 53 / 1e-07 AT1G36730 423 / 7e-147 Translation initiation factor IF2/IF5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G158400 [exp] 417 / 1e-148 AT5G20920 396 / 7e-141 embryo defective 1401, eukaryotic translation initiation factor 2 beta subunit (.1.2.3) Potri.019G131200 [exp] 412 / 9e-147 AT5G20920 399 / 7e-142 embryo defective 1401, eukaryotic translation initiation factor 2 beta subunit (.1.2.3) Potri.017G122200 [exp] 58 / 2e-09 AT1G77840 456 / 1e-158 Translation initiation factor IF2/IF5 (.1) Potri.004G112200 [exp] 54 / 3e-08 AT1G77840 493 / 2e-173 Translation initiation factor IF2/IF5 (.1) Potri.004G093600 [exp] 54 / 4e-08 AT1G77840 514 / 0.0 Translation initiation factor IF2/IF5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF01873 [flax] [poplar] eIF-5_eIF-2B Domain found in IF2B/IF5
Representative CDS sequence Show only first row Show all	>Lus10007559 pacid=23148084 polypeptide=Lus10007559 locus=Lus10007559.g ID=Lus10007559.BGIv1.0 annot-version=v1.0 ATGGCCATTCCGGTTTTCACTTTAATCATTGTGCGATTCGCCATTTCTTATGCAGCAATCATGGCTGACGAAGAACACGCCGAGATTCCCGAACTCGCAC CATTCGATCCTACCAAGAAGAAGAAGAAGAAGAAAGTCGTGATACAGGATATTGCTGACGAGCCAGTGGAAAAGCTGGCTGAGAAAACTGAATTATTGTC AGTTGCAGATGGGGTTGAAAGCTCGTTTTCGGGTTTGAAAAAGAAGAAGAAGAAGCCTGTTGAAACTAGACTTCTGAATGAAGAAACTGGTGATGCCGAA GAAGATGTGGATGACCATGTGCCAGAAGAAGCTGAAGGGGAAGACGGCGCTGCACTGCAGAACCGTTATCCGTGGGAGAGGAGTGATCGTGATTATTACT ATTCAGAGCTTATTGATAGGGTTTATGAGAATTTGCGTGAGAATAATCCGGAGCTTTCAGGAGATAGGCGTAGGACTGTTATGAGGCCTCCACAGGTTCT TCGTGAAGGGACAAAGAAGACTGTGTTTGCAAACTTCATGGACCTTTGCAAGAGCATGCACAGGCAACCAGACCACGTCATGGCATTCCTGCTCGCTGAG TTGGGAACTAGCGGATCCCTCGATGGTCAGCAAAGGTTGGTCGTGAAAGGACGGTTTGCGCCTAAGAATTTTGAAGGGATCCTCCGAAGATACATCAATG AGTATGTTATCTGTCTCGGGTGCAAGAGTCCAGATACAATCCTTTCCAAGGAGAATCGTCTCTTCTTCCTCCGATGCGAGAAGTGTGGCTCGGGTAGGTC AGTGGCACCCATCAAGGCCGGGTTCGTTGCTCGTGTCGGCCGCCGAAACGCTGGGACATGA
AA sequence Show only first row Show all	>Lus10007559 pacid=23148084 polypeptide=Lus10007559 locus=Lus10007559.g ID=Lus10007559.BGIv1.0 annot-version=v1.0 MAIPVFTLIIVRFAISYAAIMADEEHAEIPELAPFDPTKKKKKKKVVIQDIADEPVEKLAEKTELLSVADGVESSFSGLKKKKKKPVETRLLNEETGDAE EDVDDHVPEEAEGEDGAALQNRYPWERSDRDYYYSELIDRVYENLRENNPELSGDRRRTVMRPPQVLREGTKKTVFANFMDLCKSMHRQPDHVMAFLLAE LGTSGSLDGQQRLVVKGRFAPKNFEGILRRYINEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFVARVGRRNAGT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20920		EIF2 BETA, EMB1...	embryo defective 1401, eukaryo...		Lus10007559 [exp]	0	1
AT2G32060			Ribosomal protein L7Ae/L30e/S1...		Lus10027800 [exp]	7.8	0.9302
AT5G57290			60S acidic ribosomal protein f...		Lus10012714 [exp]	9.8	0.9186
AT2G36620		RPL24A	ribosomal protein L24 (.1)		Lus10035584 [exp]	11.7	0.9189
AT1G13690		ATE1	ATPase E1 (.1)		Lus10004641 [exp]	12.4	0.9168
AT5G02740			Ribosomal protein S24e family ...		Lus10003991 [exp]	14.4	0.9178
AT5G56710			Ribosomal protein L31e family ...		Lus10015698 [exp]	19.6	0.9153
AT1G33110			MATE efflux family protein (.1...		Lus10013626 [exp]	23.6	0.8971
AT3G61140		EMB78, CSN1, CO...	EMBRYO DEFECTIVE 78, COP9 SIGN...		Lus10036566 [exp]	25.5	0.9136
AT5G23740		RPS11-BETA	ribosomal protein S11-beta (.1...		Lus10001681 [exp]	25.6	0.9138
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10004942 [exp]	27.5	0.9116

Compare expression of checked genes

Lus10007559 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.