Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34770 89 / 6e-24 SAUR-like auxin-responsive protein family (.1) AT4G34800 88 / 8e-24 SAUR-like auxin-responsive protein family (.1) AT2G21210 84 / 4e-22 SAUR-like auxin-responsive protein family (.1) AT4G34810 83 / 2e-21 SAUR-like auxin-responsive protein family (.1) AT4G38850 79 / 3e-20 SAUR-AC1, ATSAUR15, ATSR15AU, SAUR15, SAUR_AC1 SMALL AUXIN UP RNA 1 FROM ARABIDOPSIS THALIANA ECOTYPE COLUMBIA, ARABIDOPSIS COLUMBIA SAUR GENE 1, ARABIDOPSIS THALIANA SMALL AUXIN UPREGULATED 15, SAUR-like auxin-responsive protein family (.1) AT4G34790 79 / 8e-20 SAUR-like auxin-responsive protein family (.1) AT5G18080 78 / 8e-20 SAUR24 small auxin up RNA 24, SAUR-like auxin-responsive protein family (.1) AT5G18020 78 / 9e-20 SAUR-like auxin-responsive protein family (.1) AT5G18050 76 / 5e-19 SAUR-like auxin-responsive protein family (.1) AT5G18060 76 / 5e-19 SAUR-like auxin-responsive protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012183 [exp] 255 / 2e-89 AT4G34770 89 / 5e-24 SAUR-like auxin-responsive protein family (.1) Lus10007563 [exp] 186 / 6e-62 AT4G34800 87 / 2e-23 SAUR-like auxin-responsive protein family (.1) Lus10012182 [exp] 182 / 1e-60 AT4G34800 86 / 1e-22 SAUR-like auxin-responsive protein family (.1) Lus10007560 [exp] 88 / 1e-23 AT4G34770 139 / 3e-44 SAUR-like auxin-responsive protein family (.1) Lus10012185 [exp] 86 / 6e-23 AT4G34770 139 / 3e-44 SAUR-like auxin-responsive protein family (.1) Lus10007561 [exp] 85 / 3e-22 AT4G34810 125 / 1e-38 SAUR-like auxin-responsive protein family (.1) Lus10042378 [exp] 82 / 2e-21 AT4G34810 129 / 3e-40 SAUR-like auxin-responsive protein family (.1) Lus10012184 [exp] 82 / 3e-21 AT4G34810 125 / 9e-39 SAUR-like auxin-responsive protein family (.1) Lus10026294 [exp] 81 / 8e-21 AT4G34810 124 / 3e-38 SAUR-like auxin-responsive protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G165800 [exp] 85 / 2e-22 AT4G34770 152 / 2e-49 SAUR-like auxin-responsive protein family (.1) Potri.009G127600 [exp] 84 / 8e-22 AT5G18080 116 / 7e-35 small auxin up RNA 24, SAUR-like auxin-responsive protein family (.1) Potri.009G127700 [exp] 83 / 1e-21 AT5G18080 114 / 1e-34 small auxin up RNA 24, SAUR-like auxin-responsive protein family (.1) Potri.009G126700 [exp] 82 / 3e-21 AT4G38840 126 / 3e-39 SAUR-like auxin-responsive protein family (.1) Potri.004G166300 [exp] 82 / 3e-21 AT5G18020 113 / 6e-34 SAUR-like auxin-responsive protein family (.1) Potri.009G127500 [exp] 82 / 4e-21 AT2G21210 128 / 5e-40 SAUR-like auxin-responsive protein family (.1) Potri.004G165200 [exp] 81 / 5e-21 AT5G18020 122 / 6e-38 SAUR-like auxin-responsive protein family (.1) Potri.004G166100 [exp] 81 / 8e-21 AT2G21210 119 / 2e-36 SAUR-like auxin-responsive protein family (.1) Potri.004G165600 [exp] 81 / 8e-21 AT4G34770 118 / 4e-36 SAUR-like auxin-responsive protein family (.1) Potri.009G126300 [exp] 78 / 6e-20 AT5G18060 123 / 2e-38 SAUR-like auxin-responsive protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02519 [flax] [poplar] Auxin_inducible Auxin responsive protein
Representative CDS sequence Show only first row Show all	>Lus10007562 pacid=23148127 polypeptide=Lus10007562 locus=Lus10007562.g ID=Lus10007562.BGIv1.0 annot-version=v1.0 ATGGGAATCAGAAGCTTGCTACCATCATCGGTGGTGGTCGGAGCCAAGAAGATAATGAAGAGGAAGCTACACAGCAACCACCACCACTATCAGCGACGGC AAGAGTACACTCGACACTTCCCGTCGCTAAATGATCAACACGATGATGAACATTCTGCCGTCCCTAAAGGCCACATTGCGGTCTACGTAATGGGGGATGA TTATCATGGTTATGCGACGACGAGGAAGAGGTTGGTGGTCCCCGTTTCGTACGTGAACCACCCCAAATTCGGGGAGTTGCTGGATCGGGCTGAGGCTGAG TTTGGCGGGTTCGACCACCCGATGGGGGCCATTACTCTTCCTTGCGACGAGGATGCTTTCTTCCGTCTTCTCTCTCTTCCCGTATTTTGA
AA sequence Show only first row Show all	>Lus10007562 pacid=23148127 polypeptide=Lus10007562 locus=Lus10007562.g ID=Lus10007562.BGIv1.0 annot-version=v1.0 MGIRSLLPSSVVVGAKKIMKRKLHSNHHHYQRRQEYTRHFPSLNDQHDDEHSAVPKGHIAVYVMGDDYHGYATTRKRLVVPVSYVNHPKFGELLDRAEAE FGGFDHPMGAITLPCDEDAFFRLLSLPVF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34770			SAUR-like auxin-responsive pro...		Lus10007562 [exp]	0	1
AT5G47950			HXXXD-type acyl-transferase fa...		Lus10002893 [exp]	1.4	0.9457
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10004331 [exp]	2.4	0.9520
AT3G56230			BTB/POZ domain-containing prot...		Lus10010216 [exp]	4.2	0.9433
AT1G13580		LOH3, LAG13	LAG One Homologue 3, LAG1 long...		Lus10013063 [exp]	5.3	0.9154
AT2G17080			Arabidopsis protein of unknown...		Lus10014447 [exp]	5.5	0.9229
AT3G18180			Glycosyltransferase family 61 ...		Lus10036003 [exp]	6.9	0.9412
AT2G47270	bHLH	bHLH151, UPB1	UPBEAT1, sequence-specific DNA...		Lus10002419 [exp]	8.9	0.9381
AT5G10720		CKI2, AHK5	CYTOKININ INDEPENDENT 2, histi...		Lus10020115 [exp]	10.1	0.9349
					Lus10024121 [exp]	11.7	0.9269
AT3G21710			unknown protein		Lus10039666 [exp]	12.5	0.9158

Compare expression of checked genes

Lus10007562 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.