Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34830 798 / 0 PDE346, MRL1 PIGMENT DEFECTIVE 346, MATURATION OF RBCL 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63070 125 / 1e-29 pentatricopeptide (PPR) repeat-containing protein (.1) AT2G31400 124 / 8e-29 GUN1 genomes uncoupled 1 (.1) AT5G39710 122 / 2e-28 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G61990 122 / 4e-28 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G31850 121 / 1e-27 PGR3 proton gradient regulation 3 (.1) AT1G62670 120 / 1e-27 RPF2 rna processing factor 2 (.1) AT1G09820 119 / 1e-27 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G63330 117 / 6e-27 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G04810 117 / 1e-26 pentatricopeptide (PPR) repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012180 [exp] 1709 / 0 AT4G34830 800 / 0.0 PIGMENT DEFECTIVE 346, MATURATION OF RBCL 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042529 [exp] 138 / 8e-33 AT5G65560 498 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021989 [exp] 127 / 2e-29 AT5G65560 498 / 2e-157 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003657 [exp] 125 / 3e-29 AT2G31400 902 / 0.0 genomes uncoupled 1 (.1) Lus10022290 [exp] 125 / 5e-29 AT2G31400 911 / 0.0 genomes uncoupled 1 (.1) Lus10012037 [exp] 119 / 2e-27 AT2G15630 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10023863 [exp] 119 / 4e-27 AT5G12100 728 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10019524 [exp] 119 / 4e-27 AT3G54980 716 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027974 [exp] 118 / 8e-27 AT1G19290 480 / 1e-156 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G166600 [exp] 942 / 0 AT4G34830 1044 / 0.0 PIGMENT DEFECTIVE 346, MATURATION OF RBCL 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G264800 [exp] 128 / 7e-30 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.014G090400 [exp] 126 / 2e-29 AT5G28460 637 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G074500 [exp] 123 / 8e-29 AT1G62930 478 / 1e-162 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G034200 [exp] 122 / 1e-28 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.016G025600 [exp] 122 / 2e-28 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 122 / 3e-28 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G034400 [exp] 120 / 5e-28 AT3G22470 476 / 1e-161 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G242500 [exp] 120 / 7e-28 AT1G62930 473 / 1e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G147700 [exp] 120 / 8e-28 AT2G15630 736 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10007565 pacid=23148069 polypeptide=Lus10007565 locus=Lus10007565.g ID=Lus10007565.BGIv1.0 annot-version=v1.0 ATGTCTCATTTAAGCTCAAGCATCAGGAGCCACATTAATGGCAATAGGGCTATACGTCTTCGAGATGTTCAGAATGGGGTTTCTCGGCACTTTGGGTTGA AGGTAGAAGAGAAGGTCTCGATTCCGGTTATTAATGACAAGCATTTACAACTGGAGGAAGTGCACTATGGTTCTACTGGCTTGGCTGAAGAAACCGTGGA GTCCCCTGCTGCAGTGTTGGCTGCCTCGACAGTTCGTGAGCATGTGGTTGCTAAAGAGTCGGCTCCTGTTACTGCCGCTTTGCCTCTAGTTTTTGAAGGA GAAACTTCCGACTCTATTCCAGAGAACCCACGAGAAAAAAATGGTTCGCCTCATGGGGGAAGTGACGATGCTCACATTCAAGGGACACATTATAGTTCTG TGATAACTGAAATGAGGGAATCCTGTGCTGCTGATTTTCTGGCCTCTTCTGCTCTTAACAATGTGGCTTACAAAGATTCTGAAGCTGCTAATGATATCGT ATCACCTATCTTTGTGAACGGAGCAGTGAAATTTCCCCCGGAAAAGATTGGAGATATTCCACAATTGAAGCCCGAGTCTGCTGATGAAGTGGAAAGTGCA GAATCTAGCTCGACTTCGACAACACGGGATGATGAATCAGGCATACTGGGTAATAACATTGGAAGCTTCTATAACACCACTGAAGAATCTGCCAGGGAAG GTCTTTACACATTTTTTGAGCCGAAGGAAACAGACGTCAAATCTGGGACCAAAATAAATGGTTTTAAAGCGATATATTCTTCTTACAAACGAAGAAGTCT TTTCCCTTCGTTGAAAGTGCATTCTTCACAAAGAGGTGCTGAATTATCCACACATACGACCATTCAGACACAAGAACACTCCAACGGAAAATTACCTCAG TCAAATAGGGAAGCGGGTCCTGTCCAGAAGAGTAAAAAAACAGGAAGCAGGAAAGGAAGTGATCAGGGTCCAAAGCCATCAAAGCTCCCAAGCCCTAATG GGTATCATTCGGATGACAAAACCAAGCCTTCAGAACAGTTCGATACTTACAACTATTTACTGAAAGATGGAAGGTTAGTAGAATGTGTAGATTTTCTGGA GGACATGGAAAGTAAGGGTTTCCTAGACATGAACAAGGTGTATCATGCCAAGTTTTTTGACATGTGCAAACATCAAAAGGCTGTTAAGGAAGCTTTCCGT TTCTGCAAGCTAATTCCAAATCCAACATTAAGTACGTTTAACATGCTTATGTCTGTCTGTACAAGTTCACAAGATTCTGCTGGAGCCTTTCAGGTCCTAA AACTTGCCGAGGGAGCTCGACTGCAACCTGATTGTAAGCTTTATACTACTTTGATATCAACCTGCGCAAAATGTGGAAAAGTTGATGCAATGTTTGAAGT CTTTCATAAGATGGTGAATGCTGGAGTTGAACCAAACCTCCACACATATGGGGCTCTAATTGATGGGTGTGCCAAAGCTGGACAAGTGGCTAAGGCATTT GGTGCGTATGGCATAATGAGGTCAAAGAAATTGAAGCCAGATCGAGTTGTATTCAACGCACTTATAACCGCGTGTGGTCAATCAGGAGCTGTTGACCGTG CCTTTGACGTGCTGTCAGAAATGGTGGGTGAGGTACACCCTATTGATCCTGATCATGTCACTGTCGGTGCTCTAATAAAGGCATGTGCAAAAGGTGGTCA GGTTGACCGAGCAAAAGAAGTTTACAACATGCTTGATCGGTATAAGATCAAGGGCACTCCTGAAGTCTATACGATTGCCATTCACTGCTGCAGTGAGGCT GGCGATTGGGACTTTGCACATCGTGTGTGCGATGACATGTTAAAGAAAGGCATCCTTCCTGATGAGGTTCCAACTCTAAGACGATATGTTTTATACTATA ACATGAAGGCCCTTATACTAAAGCCAACAGTTCCAACCATGAATGCTTTGATCACTGCTTTATGTGATGGAGACCAACTGCAAACGGCTGTTGAGCTATT TTCAGACATGAAGAGATTAGGCCTGAAGCCAAACACCATTACATACTCTGTTCTCTTGGTGGCAAGTGAGAGAAAGGATGATGTTGACACTGGCGTGATG CTTTTCTCCGAGGCCAAGAAAGATCATATTACACCTACCCTCCTCATGTATAAATGCGTAATTGGCATGTGTCTACATGGTTACGAGAAGGCTTGTACTA GTGGCGTGCCAATCCTATCTGAGTCCGGACAACCCCACATAGTAAATAAATGGACAACACAGGCCTTAACAGTGTACCGAGAAATGCTCGTTACCGGCGA GAAACCAACAATGGAAGTTGTCTCTCAAATTCTAGGAAGCTTGCGGCTCCCTTATGATCCTTCAGTGAAGGAAAGACTCGTCGAAAATCTGGACATTACT GTCGAATCATCAACACGCTCCAACTTATGCTCCTTGGTCGATGGATTTGGAGAGTATGATCCCCGCGCCTTCTCATTACTTGAGGAAGCTGCTTCTCTTG GAACTATCCCGCAATTATCGTTCAAAGCAAACCCAATCATGGTTGATGCCAAGAAGATGGATGCCCGAATTTCTGAGGTGTACTTATTAACAGTTTTCAG AGGTCTAAAGCACAGGCTTGCTGCTGGTGCCAGGCTGCCCAATGTGATGATTCTGCTTCCCACAGAACAGGGCAAAGTCATTGCTCCTGAACAGGAGAAG ACCATAATCCTCGCAGGACGGGTAGCACAAGCTGTAGCTTCGCTGTTGAGAAGGCTAGGGATAGCTTATCAAGGGGACGAATCGTACGGGAAGATTCGAA TCAACGGCATCACTCTACGAAGATGGTTCCAACCAAAGCTTGCAGCCACTCCTTTCACCGGCAAGCCAGACGAGTTCAACATGTTCCAGTCTCGAACCGT CAAAGGAATCAGCAGTCAGCAGCGCGACATTCGATCCGGTCACCTCTCTCTCGACTGA
AA sequence Show only first row Show all	>Lus10007565 pacid=23148069 polypeptide=Lus10007565 locus=Lus10007565.g ID=Lus10007565.BGIv1.0 annot-version=v1.0 MSHLSSSIRSHINGNRAIRLRDVQNGVSRHFGLKVEEKVSIPVINDKHLQLEEVHYGSTGLAEETVESPAAVLAASTVREHVVAKESAPVTAALPLVFEG ETSDSIPENPREKNGSPHGGSDDAHIQGTHYSSVITEMRESCAADFLASSALNNVAYKDSEAANDIVSPIFVNGAVKFPPEKIGDIPQLKPESADEVESA ESSSTSTTRDDESGILGNNIGSFYNTTEESAREGLYTFFEPKETDVKSGTKINGFKAIYSSYKRRSLFPSLKVHSSQRGAELSTHTTIQTQEHSNGKLPQ SNREAGPVQKSKKTGSRKGSDQGPKPSKLPSPNGYHSDDKTKPSEQFDTYNYLLKDGRLVECVDFLEDMESKGFLDMNKVYHAKFFDMCKHQKAVKEAFR FCKLIPNPTLSTFNMLMSVCTSSQDSAGAFQVLKLAEGARLQPDCKLYTTLISTCAKCGKVDAMFEVFHKMVNAGVEPNLHTYGALIDGCAKAGQVAKAF GAYGIMRSKKLKPDRVVFNALITACGQSGAVDRAFDVLSEMVGEVHPIDPDHVTVGALIKACAKGGQVDRAKEVYNMLDRYKIKGTPEVYTIAIHCCSEA GDWDFAHRVCDDMLKKGILPDEVPTLRRYVLYYNMKALILKPTVPTMNALITALCDGDQLQTAVELFSDMKRLGLKPNTITYSVLLVASERKDDVDTGVM LFSEAKKDHITPTLLMYKCVIGMCLHGYEKACTSGVPILSESGQPHIVNKWTTQALTVYREMLVTGEKPTMEVVSQILGSLRLPYDPSVKERLVENLDIT VESSTRSNLCSLVDGFGEYDPRAFSLLEEAASLGTIPQLSFKANPIMVDAKKMDARISEVYLLTVFRGLKHRLAAGARLPNVMILLPTEQGKVIAPEQEK TIILAGRVAQAVASLLRRLGIAYQGDESYGKIRINGITLRRWFQPKLAATPFTGKPDEFNMFQSRTVKGISSQQRDIRSGHLSLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34830		PDE346, MRL1	PIGMENT DEFECTIVE 346, MATURAT...		Lus10007565 [exp]	0	1
AT4G34830		PDE346, MRL1	PIGMENT DEFECTIVE 346, MATURAT...		Lus10012180 [exp]	1.0	0.9864
AT4G01800		AtcpSecA, AGY1,...	Arabidopsis thaliana chloropla...		Lus10038031 [exp]	2.4	0.9437
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015112 [exp]	3.0	0.9420
AT4G30825			Tetratricopeptide repeat (TPR)...		Lus10036601 [exp]	3.7	0.9251
AT1G19150		LHCA2*1, LHCA2*...	photosystem I light harvesting...		Lus10027649 [exp]	4.4	0.9105
AT1G01320			Tetratricopeptide repeat (TPR)...		Lus10004009 [exp]	4.9	0.9165
AT1G01320			Tetratricopeptide repeat (TPR)...		Lus10030259 [exp]	5.2	0.9216
AT1G12800			Nucleic acid-binding, OB-fold-...		Lus10008475 [exp]	5.7	0.9313
AT4G28080			Tetratricopeptide repeat (TPR)...		Lus10036604 [exp]	6.0	0.9129
AT4G28080			Tetratricopeptide repeat (TPR)...		Lus10035822 [exp]	6.5	0.9146

Compare expression of checked genes

Lus10007565 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.