Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38810 498 / 7e-178 Calcium-binding EF-hand family protein (.1.2) AT5G28830 65 / 1e-11 calcium-binding EF hand family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012178 [exp] 666 / 0 AT4G38810 468 / 5e-166 Calcium-binding EF-hand family protein (.1.2) Lus10026291 [exp] 570 / 0 AT4G38810 481 / 9e-171 Calcium-binding EF-hand family protein (.1.2) Lus10042380 [exp] 539 / 0 AT4G38810 463 / 2e-164 Calcium-binding EF-hand family protein (.1.2) Lus10009175 [exp] 69 / 6e-13 AT5G28830 281 / 2e-93 calcium-binding EF hand family protein (.1) Lus10015916 [exp] 67 / 4e-12 AT5G28830 281 / 6e-94 calcium-binding EF hand family protein (.1) Lus10035578 [exp] 43 / 5e-05 AT2G44310 182 / 3e-60 Calcium-binding EF-hand family protein (.1) Lus10008649 [exp] 42 / 0.0002 AT2G44310 177 / 2e-58 Calcium-binding EF-hand family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G166900 [exp] 566 / 0 AT4G38810 520 / 0.0 Calcium-binding EF-hand family protein (.1.2) Potri.009G127800 [exp] 565 / 0 AT4G38810 484 / 7e-172 Calcium-binding EF-hand family protein (.1.2) Potri.013G040500 [exp] 69 / 7e-13 AT5G28830 311 / 3e-105 calcium-binding EF hand family protein (.1) Potri.005G052900 [exp] 67 / 3e-12 AT5G28830 321 / 2e-109 calcium-binding EF hand family protein (.1) Potri.002G218300 [exp] 51 / 8e-08 AT2G44310 138 / 9e-43 Calcium-binding EF-hand family protein (.1) Potri.001G231100 [exp] 51 / 1e-07 AT2G44310 221 / 2e-75 Calcium-binding EF-hand family protein (.1) Potri.002G218750 [exp] 50 / 1e-07 AT2G44310 136 / 3e-42 Calcium-binding EF-hand family protein (.1) Potri.002G218700 [exp] 50 / 1e-07 AT2G44310 137 / 3e-42 Calcium-binding EF-hand family protein (.1) Potri.002G218500 [exp] 50 / 1e-07 AT2G44310 140 / 7e-44 Calcium-binding EF-hand family protein (.1) Potri.002G218725 [exp] 50 / 2e-07 AT2G44310 135 / 1e-41 Calcium-binding EF-hand family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007567 pacid=23148088 polypeptide=Lus10007567 locus=Lus10007567.g ID=Lus10007567.BGIv1.0 annot-version=v1.0 ATGGACACAAGTTTCAGCGCTGCCAGTAATCATGGGCAGGTGATGGACGGTTCGGATATAATGGAGTTGGTTGGGAACCAGCAGGTGTTTACCAGCTTCA TCGATCACAAGTTCTCTGAACTCGATACAGATAACGACGGCCATCTCTCTGTCAAGGAGCTCCATCCTGCTGTCGCCGACATTGGAGCTGCTCTTGGGTT GCCTGCTCAGGGTTCGTCGCCTGACTCTGATCTCATCTACTCTGAGGTTTTGAATGAATTCACCCATGGGAAGCAAGCGAAAGTGAGCAAGACCGAGTTC AAAGAAGTGCTGTCAGATATTCTGCTAGGTATGGCAGCAGGTTTGAAGAGAGACCCTGTGGTGATCCTCCGTATCGATGGAGAAGACCTGTTAGAGTTCA TCAGCGGACCAGGTTATGAACCGGAGATGGTTTCTATCTTCTCGGAGTTGGAACCACCTGATGCTCCACTGCATGATTACATACTGAAAGCGTTCGGGAA GCTTACAGTTGATCAAGGGATACCTCCATCTTCAGATTCTTGGGTGATAAGCAACGTACTGGAGCCATCGCTGCAGTCGATCGCTGACCAAGATCTCAAT AAACCCGTCTCACAGGAGGTGTTCTTAGATTCGTTCAAGAGAGTAGCTGAATCTGTTGCTCAACGTCTCAAAGAGCAGCCTGTGATTGTGGCTCATAGTG AGAACACTTTTGATGGGAGTGGCATTAAGAGACTTCTTTCCAACAAGTTTGAGCTTGACAAGACACTAAACTCAGCCATAGAGGATGTGCCAAGGGATCG AAACGGGAAGATATCGAAAGACCACATACGCGTGGCCCTCGATTCCGTTGCTCCATATGCCGGCCTACCTCCAATTGGTGCAATTGAACAGATGGACCAG GTGATGAACGAAGCACTCAAGATCGCGAACTCAGACGACGGGAAGCAAGTAAAGGATGACGAATTCAAGAAGATGGTTGCTGAAATCTTGGGAAGCATCA TGCTACAGCTGGAAGGAAGTCCAATCTCAGTCTCTTCAAACTCTGTTGTTCATGAACCTATTGCCTCTGCATCTACACTTCTGCAGCCTCCTTCTTAG
AA sequence Show only first row Show all	>Lus10007567 pacid=23148088 polypeptide=Lus10007567 locus=Lus10007567.g ID=Lus10007567.BGIv1.0 annot-version=v1.0 MDTSFSAASNHGQVMDGSDIMELVGNQQVFTSFIDHKFSELDTDNDGHLSVKELHPAVADIGAALGLPAQGSSPDSDLIYSEVLNEFTHGKQAKVSKTEF KEVLSDILLGMAAGLKRDPVVILRIDGEDLLEFISGPGYEPEMVSIFSELEPPDAPLHDYILKAFGKLTVDQGIPPSSDSWVISNVLEPSLQSIADQDLN KPVSQEVFLDSFKRVAESVAQRLKEQPVIVAHSENTFDGSGIKRLLSNKFELDKTLNSAIEDVPRDRNGKISKDHIRVALDSVAPYAGLPPIGAIEQMDQ VMNEALKIANSDDGKQVKDDEFKKMVAEILGSIMLQLEGSPISVSSNSVVHEPIASASTLLQPPS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38810			Calcium-binding EF-hand family...		Lus10007567 [exp]	0	1
AT4G38810			Calcium-binding EF-hand family...		Lus10012178 [exp]	1.0	0.9448
AT3G16500	AUX_IAA	IAA26, PAP1	indole-3-acetic acid inducible...		Lus10006842 [exp]	2.0	0.8913
AT5G10860		CBSX3	CBS domain containing protein ...		Lus10034441 [exp]	3.5	0.8402
AT3G16500	AUX_IAA	IAA26, PAP1	indole-3-acetic acid inducible...		Lus10037587 [exp]	4.5	0.8336
AT2G22420			Peroxidase superfamily protein...		Lus10025737 [exp]	6.3	0.8253
AT1G80940			unknown protein		Lus10041624 [exp]	6.5	0.8297
AT5G44070		ATPCS1, ARA8, C...	CADMIUM SENSITIVE 1, ARABIDOPS...		Lus10003623 [exp]	7.7	0.8150
AT1G51200			A20/AN1-like zinc finger famil...		Lus10031833 [exp]	9.9	0.8110
AT1G70670		AtCLO4	Arabidopsis thaliana caleosin ...		Lus10041446 [exp]	11.2	0.8419
AT1G13970			Protein of unknown function (D...		Lus10030425 [exp]	11.6	0.7988

Compare expression of checked genes

Lus10007567 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.