Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00430 100 / 1e-24 PIP1;4, TMP-C, PIP1E TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) AT3G61430 100 / 2e-24 ATPIP1, PIP1;1, PIP1A PLASMA MEMBRANE INTRINSIC PROTEIN 1;1, ARABIDOPSIS THALIANA PLASMA MEMBRANE INTRINSIC PROTEIN 1, plasma membrane intrinsic protein 1A (.1.2) AT2G45960 100 / 3e-24 PIP1;2, ATHH2, TMP-A, PIP1B TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3) AT2G16850 99 / 4e-24 PIP3B, PIP2;8 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) AT1G01620 98 / 2e-23 TMP-B, PIP1C, PIP1;3 PLASMA MEMBRANE INTRINSIC PROTEIN 1;3, plasma membrane intrinsic protein 1C (.1.2) AT4G35100 96 / 6e-23 SIMIP, PIP3A, PIP2;7, PIP3 PLASMA MEMBRANE INTRINSIC PROTEIN 3A, PLASMA MEMBRANE INTRINSIC PROTEIN 2;7, plasma membrane intrinsic protein 3 (.1.2) AT2G37170 95 / 2e-22 PIP2;2, PIP2B PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) AT3G53420 94 / 3e-22 PIP2;1, PIP2A PLASMA MEMBRANE INTRINSIC PROTEIN 2;1, plasma membrane intrinsic protein 2A (.1.2) AT4G23400 93 / 7e-22 PIP1D, PIP1;5 plasma membrane intrinsic protein 1;5 (.1) AT2G37180 93 / 1e-21 PIP2C, PIP2;3, RD28 RESPONSIVE TO DESICCATION 28, PLASMA MEMBRANE INTRINSIC PROTEIN 2C, PLASMA MEMBRANE INTRINSIC PROTEIN 2;3, Aquaporin-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042385 [exp] 339 / 2e-117 AT3G61430 94 / 1e-22 PLASMA MEMBRANE INTRINSIC PROTEIN 1;1, ARABIDOPSIS THALIANA PLASMA MEMBRANE INTRINSIC PROTEIN 1, plasma membrane intrinsic protein 1A (.1.2) Lus10042375 [exp] 176 / 4e-53 AT1G73190 104 / 3e-26 ALPHA-TONOPLAST INTRINSIC PROTEIN, Aquaporin-like superfamily protein (.1) Lus10014978 [exp] 96 / 8e-23 AT2G16850 514 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) Lus10039222 [exp] 95 / 2e-22 AT2G16850 518 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) Lus10027467 [exp] 94 / 3e-22 AT2G16850 518 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) Lus10019934 [exp] 92 / 2e-21 AT2G37170 474 / 6e-171 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Lus10023184 [exp] 92 / 3e-21 AT2G37170 490 / 3e-177 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Lus10026295 [exp] 89 / 3e-21 AT3G61430 66 / 2e-13 PLASMA MEMBRANE INTRINSIC PROTEIN 1;1, ARABIDOPSIS THALIANA PLASMA MEMBRANE INTRINSIC PROTEIN 1, plasma membrane intrinsic protein 1A (.1.2) Lus10028273 [exp] 92 / 4e-21 AT4G00430 511 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G128000 [exp] 405 / 8e-143 AT4G23400 100 / 3e-24 plasma membrane intrinsic protein 1;5 (.1) Potri.004G167000 [exp] 399 / 2e-140 AT3G61430 96 / 6e-23 PLASMA MEMBRANE INTRINSIC PROTEIN 1;1, ARABIDOPSIS THALIANA PLASMA MEMBRANE INTRINSIC PROTEIN 1, plasma membrane intrinsic protein 1A (.1.2) Potri.009G128300 [exp] 377 / 2e-132 AT3G61430 93 / 6e-22 PLASMA MEMBRANE INTRINSIC PROTEIN 1;1, ARABIDOPSIS THALIANA PLASMA MEMBRANE INTRINSIC PROTEIN 1, plasma membrane intrinsic protein 1A (.1.2) Potri.009G127900 [exp] 375 / 4e-131 AT2G45960 107 / 6e-27 TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3) Potri.009G128500 [exp] 374 / 1e-130 AT4G23400 85 / 6e-19 plasma membrane intrinsic protein 1;5 (.1) Potri.009G128100 [exp] 201 / 1e-63 AT1G73190 91 / 1e-21 ALPHA-TONOPLAST INTRINSIC PROTEIN, Aquaporin-like superfamily protein (.1) Potri.010G222700 [exp] 101 / 1e-24 AT3G54820 484 / 6e-175 PLASMA MEMBRANE INTRINSIC PROTEIN 2D, plasma membrane intrinsic protein 2;5 (.1) Potri.004G176300 [exp] 97 / 2e-23 AT4G35100 513 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3A, PLASMA MEMBRANE INTRINSIC PROTEIN 2;7, plasma membrane intrinsic protein 3 (.1.2) Potri.006G128200 [exp] 97 / 5e-23 AT2G37170 490 / 3e-177 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Potri.003G128600 [exp] 96 / 7e-23 AT4G00430 514 / 0.0 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00230 [flax] [poplar] MIP Major intrinsic protein
Representative CDS sequence Show only first row Show all	>Lus10007568 pacid=23148105 polypeptide=Lus10007568 locus=Lus10007568.g ID=Lus10007568.BGIv1.0 annot-version=v1.0 ATGGCTGCTGGAGGGGGAGGGGGAGTTGACATTCATGATGTCGATGAAGAAAATGGCTATGGCTCCAACAGGATCCAGCCCTTTTCCACCACACCAATGC CATTGCTCAAATCAGAGAAAGAGGAGAAGAAACCAAACCATGCCACACCACTCCAAGCGTTACTTGGAACACAAGATATCTTATCTTTAAATGTATGGAG AGCCGCGGTGGCAGAGCTTGTCGGGACAGCAATCCTCGTATTCGCCCTTGACACTATAGTGATCTCAACCCTAGAGTCTAAAACAACAATGCCAAACCTC ATACTGTCCTGCCTAGTGGCCCCCATCATATCAATCCTCCTGATCGCCACATTCCCGATCTCTGGCGGCCACATAAACCCGATCATCACGTTCGCCGCGT TCCTCGTTGGCCTCGAATCCGCCGCCAAGGCAGCCATCTACATCATGGCTCAATGCCTAGGCGCCATTGTTGGTGCCCTAGCCTTGAAAGCCGTGGTCAA CACCTCCATCGAGTCAACGTTCTCACTAGGAGGCTGCACTCTCACAGTTGTCACACCAGGCCCAGATGGCAGGCCCGTTGTGACTGGGCTTGGGCTGAGC CAGGCCCTTTGGCTTGAGATAATCTGTGGGTTTGTGTTCTTGTTTGCTTCCGTTTGGATGGCGTTTGACGGCCGTCAAGCTCGGGCACTGGGTCGGGTTA CAGTGAGTGTTATTATTGGGATTGTTTTGGGGCTTTTGGTCTTTGTCTCGACGACGGTGACGGAGGCGAAGGGGTACGCCGGCGCTGGGCTTAATCCGGC GAGGTGTTTGGGCCCGGCTATCGTTAGAGGTGGGCATCTTTGGACCGGACATTGGGTTTTTTGGATTGGGCCGGCGATTGCTTCTATTGCGTTTGCTTTT GACATAGTTAAACAAGTTAAAGCTATTGGTCAGAAGGGAGGATAA
AA sequence Show only first row Show all	>Lus10007568 pacid=23148105 polypeptide=Lus10007568 locus=Lus10007568.g ID=Lus10007568.BGIv1.0 annot-version=v1.0 MAAGGGGGVDIHDVDEENGYGSNRIQPFSTTPMPLLKSEKEEKKPNHATPLQALLGTQDILSLNVWRAAVAELVGTAILVFALDTIVISTLESKTTMPNL ILSCLVAPIISILLIATFPISGGHINPIITFAAFLVGLESAAKAAIYIMAQCLGAIVGALALKAVVNTSIESTFSLGGCTLTVVTPGPDGRPVVTGLGLS QALWLEIICGFVFLFASVWMAFDGRQARALGRVTVSVIIGIVLGLLVFVSTTVTEAKGYAGAGLNPARCLGPAIVRGGHLWTGHWVFWIGPAIASIAFAF DIVKQVKAIGQKGG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45960		PIP1;2, ATHH2, ...	TRANSMEMBRANE PROTEIN A, NAMED...		Lus10007568 [exp]	0	1
AT3G24010		ATING1	ARABIDOPSIS THALIANA INHIBITOR...		Lus10043140 [exp]	1.7	0.7172
AT5G49950			alpha/beta-Hydrolases superfam...		Lus10035741 [exp]	8.2	0.7295
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Lus10014917 [exp]	11.1	0.7149
AT4G29100	bHLH	bHLH068	basic helix-loop-helix (bHLH) ...		Lus10011105 [exp]	14.0	0.7125
AT1G02800		ATCEL2	cellulase 2 (.1)		Lus10001666 [exp]	19.4	0.6451
AT1G04380			2-oxoglutarate (2OG) and Fe(II...		Lus10009240 [exp]	20.6	0.7047
AT5G52975			Protein of unknown function (D...		Lus10001307 [exp]	22.3	0.5885
AT1G73170			P-loop containing nucleoside t...		Lus10015985 [exp]	23.1	0.7204
					Lus10015405 [exp]	23.2	0.6295
AT1G13030			sphere organelles protein-rela...		Lus10006465 [exp]	34.8	0.7145

Compare expression of checked genes

Lus10007568 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.