Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30150 1216 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012174 [exp] 3747 / 0 AT4G30150 1257 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G167600 [exp] 1846 / 0 AT4G30150 1491 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10441 [flax] [poplar] Urb2 Urb2/Npa2 family
Representative CDS sequence Show only first row Show all	>Lus10007572 pacid=23148108 polypeptide=Lus10007572 locus=Lus10007572.g ID=Lus10007572.BGIv1.0 annot-version=v1.0 ATGGCTGGTTCGTCAGTGAAGAAATCAGAGAAGCAGAAGAATAAGCGGAAGCTAGTATCCACTTCTGATAAAAAAGACAGACCTTCGAAGTCAGCACGTA CTGATGACTCCAAGCATAGGAAGGTGAGACATGACGAAGTTCCGGAGGAAGCTGTAAATTCAAAGAGCGATGAATTGGGATCAAGTTTTGAGCTAAGGGG CCGGGCGTGGAGGAACCTGGACTTGATTCTACTGCTCGAGAAGAACGGAGTTGATATTTCGAAGAAGGTTGAAGTTGCTTATGATTTCGTGAAGTGGAGA GGAAAAGGAGGAGCTGACGATGATGACGAAGAAGAAATTGAAACGGTTAAAGTAGCTAGGCTTGTAGTTTTCCTTAACGATTGGGTGCAAACGCAGCTGA TATCTACTCACAAGAAGCTCGAAGCAAGAGAGGCGTGTCTGGACTATAGATGTTGGGCGATTTTAAAGTTCTGTTTGGAGGAGTCGTTGAGGTCGCAGGC TTCGTTGACTTTCCATCGGAATCTTATACGAGCTTTAGGATGCGTTGCGGGGAACATGTGCAATAGTTCAGCAGAATTGTCTCGTTCAGGCAACGATGAA CTTGAGTTTAGGACGGTTGTTTTCGATTGTGTTTCTCATATGTTTGGCAGCCATTGTGGGTTGTCAAATGAGAATCTAGCCCTCTGGGTTTCGACTGTCC AGATAGTCGCTGGACTTGTGAAACAAATTTGTGGTGAGAAGGTTGGTTGTGGCGATTTGGATATTGTGGCACTGAAGTTTTCTAGCTTGGTGCTTGATGC TTTTGCCAATTTTTTGAAGGCTCATCCTACTCGAAAGAATGGATTCCGGGATTTTGTGAATGAAATTCTGGATCCACTTTTGAGCTTGTTGGGTGTATTA CACAATAAGTTAGATGGAGAGAACCCAGGCGTTACAAGAAAGTTACTGTGTGCAGTTGAGGAAATTTTAGCTAATGGTATATTTCATCAGACTCATATTG ACGAGTTTCTCTCCTTACAGAGTACTAGGAAGTATGCATCAGCTGATGGTGGTGACCAGAAGGAGCTGAGAACGGAGCCTATAAGTTATCACAGGCACTT CTTTGAGAAGTTGGAGGAGGTTATGGCTGCAAAGGAAGAGTCTTCCTCGAATAGCTTGGGACAACTGTTCCACATACTTGTTGATCGAGTGAAAAAGAAA AAGACAGCTCAACCCCTTTATGGTGATGCAAAGAAGAACGAGAAAACCGAAAGCTCAAAACACATTCCTCTTACTGTTTCTGAGACAGTTCCTAACTGTT TAAATGCAGAGAAAAGAAAATCAATTTTTGACTTCTTCGTGCAGATTATGGAACCGCTTTTATGTAAGATGAATGTCTACCTTGAAGCTAAGTTGGAACT AGGTCCTATGTTATTAGATGTTCATCGTACAATGAAGTCCATTAATGTCTTACTAGGAAGCTTTTTGAAGGAAAAGTTTTATATGAAGGCAGAAGATACT ACTGGAGGAGCCTGTCTTAATTTCTTAAAGCAGGTGTATGACACTATATTATCATTAGCCACCGGTATTCTTAGGTTTTTCATCCATGATGTGGATGCTA AGGAGAAAACCTTCAATTTACTAGCACGGGAGCTACTTATTGCTGTCGGATACCTTTTGGAGATTGAATATGAAGTCACCAATAATGACTTAACGAGCTT ATGGCACATGATACTTTCGTACTTTGCTGTTGGCTGTGAATGTAAGAGTGCACCTGATCAAGAGTCGTTCACCTTCCTAGGTGTAAGACTTGGATGTCAG ATATTAAATATCTATAGTGAACTGCGGCAGGTGACAAGTGCAATATCTACCTTCTGTACAGCTATCAGGCTCGTGGTAACATATGAGAACGACGCTACTG CGAATCAAAAGGATCACATAAAATTTTCCTCCTCATGGTTTCCCCAAAATACCTTTGGGAAAACTCTGGACCTTCTTTTATCCTCGCAAGCTTTTAGACT TGCCATGCATAATGCTATAAAATGCCTTCCAGAAGGACAGGCAAGTGACTGTGTGCAAAAGTTATGTGTAGAGGTGTCTCAGTCCATGCAATGGATAAAA GATAGTGCTTCCGTGGAAGATCATGTAAAGGGTAATAAAGCGAGTAAAAGAAGTCATAGAACACTTTATTTTGATCTTCAAGAGGAAATCTTTGGTAGAT TGTCCGAAGTTTACACGGTGGTTCTAGAATCTCTAACTGTCACTGCTGGCAACTGTACCTTAGTTGAGCGATGTCTAAAGGACTTGGTGGCTACAATAAG TCCCTGCATGAGTACCCTGGTTGGGCTAGAACCAGATAGTGTCAACCAGTTCATTCATTCCGTTACTGGAAGAGGAAGATACAGGATTAAGAATGGCACT TTTAAATGTGGTCATTCTGGCCATTGGGTCATTCTATTTTTCCTTCACCTGCACATGTCGTGTAGAAGCTTGTATAGGCAGGTACTTAGCCTGCTGCCTC CACGTTTGTCAAGAAAGATGTCAGAAGCAGTTGGTGATTCACTTACTGCCTACTCTGGCAAAGACTGGATGGACAGGACGGAATGGACAGTTGAGGGGTA TTTTTCCTTGATTCTTCAACCCTCAGCTTCTCTTCTCAGTGTTATACAGTCCACTTCTGATTTTTGTTCCAGAACGAGTACTGCTGACTTCTCCCCCCTT CTGTATACATATCATGCTGCTGCATTTCAGAGGCTTCATGATTTGAATAGGCAGATAAAGTCTCTAGAATACATCCTTGACGGCAATGATAAGACTGTAA AGAACAAGTTGGTTGATGACTCAGACGCATCTTTATATCGTAAACGGAGTAGAAAATTAGGTAAACGCATCTCTGTCTTGAAGCAGGAGGCAACGGATCT TACCGAGTATTCAATGAGCTGCCTCTCACTAGTGGTTGATGGTCAACTCTCATATGATCTTTCTAGTGAATGGAATTGGAGCGTTTGTTCTATTCAGAAG ACCTCATTACCTATTGCATTTTGGTGGCTGGTTTGCAGAAATATCGATGTATGGGCTATACATGCTAGTAAGAAGATGTTGAAAACTTTTCTCTCAAATC TGATCAGCACTTCACTTCCATATATGGGAAAACAGCATGGAAATGAAGCTCATTCGCTAAATACAATCTCTCTAGGACACATTTCATCAGAGCTTCTCAT GGACAGTAACTTATACGAACACAAATTTGTTTGCAGGCTTTTCACCTCAAGATTTTTGCGATTGTTGGAAGACTCTGTCGTGTCATTATCTGGTGACTTA ATGTTCATGGATGAGGAAATTTTGAGTTCTTGCATTGATTGGCCAAAGGTGCTAAAAGAACTTGGCAACTGGCCAGCTGTTGTCTCAAAGAGCAAACTGT TTGGAGACAAGTATTCTTCTGACGAGGAAAAAGTGTTCAAGGACGAATGTCCCTATTCAGTTGTGTTGAACAGTACAGCCTGCCAGAAGTTACTAAACCT TTTATGTTGGCTGCCAAAAGGATGGATGAATTCAAAGTCGTTCTCCCTTTCTATAACTTATGTACTCAACTTAGAAAGGGTTTTAATTGGCAAATTGTTA ACCTGCCATAGAAACTGGTCATATAAGCAGCAAGAACTCTTAAAACTGCTCCTGTGCTGCCGAAGGTCCTTGAAATACACAGTTATGGCATTTTGCGAGG AGAATATTGGTAGTCGATCATCACATATGCCTGTGTTTTCCGAGGACATATATGCTATTCTATGGCTTCTCAAGTCAGTATCTGCTGTAGCTGGGCTTCA AGAAAATTTGCCACAAGATTATATTGATGAAGTTAGAGATAAAATTTTCTCTATGACGGATCACACTTCATACATATTCTTGACCTTAAGCAAATATCAC TCCTTTTGTGCATTCAGCACTCTACTTGAAGGGAAAGCTAGCAAAGAGAACGTTTGCTCTACTGATGATCAGGAAAGTATTGATTCAGATGAATCTAGTC CGTGCTCTGAAGAAGTGGTAGCCTCGAAAAGCTTTCGCATTACTGCAGAGAGTTTAAAGAAAGAGTCAGAGGGCTTTCTTAATTCCTTAAATGTTCTCCT TTCCAATGACTGTTCGGGGGATGGTGTTAGTGCTGCGAATCTCCAGAAACTATCCTCTGCGGTTTCTTGCTTCAGCGGTTTCTTGTGGGGCCTCGCCTCT GTCTATAATGATGCTCACATAATAGATAATGAGCTTCAGAAGAAGTTTTTGCTTTCCAAACCTGACCTTGTTGCTACACTCAATTCCTGTGTAAGTGCAT TCTCTGATTTTGTTAGGGCATGCTTGTTCATGTTTCCGGCTGAGGATAGACATCAACCTGAGAGTACATCTGATTCTCCTGATTACCGTAAGCCTGATGG AAGCGGTGGTTTGTTGGATGCATGGAGACTCGCCTCTAAAACCTCCGTAAAGACCGGAATTTCGTGCTCCAAGCAGCAGAATTCACTTTCCGAAGATGAT TCTTTTCAGATATCACCGGTAAAGTACCCCTTGCAGAGTCTTATTGAAGGCAAACATCCGGAAGCTGGAAACTTAATCAGACAGCTTTTACTTGCTTCTT CAGCCATTTTGAAGCTCAATTTGCTAATGAAATGTACACCCTGCTCGGCGTTGGTTTCAAGTTCTATCAGTGTATCTGAGTCATTGCTGCTGAAGTTCAT CGACACCCATGAAGTGTCAAAACCGCACCTTATTATTTGGTTAGATGGAGTTCTGAAGTATCTAGAAGAACTTGGCAGTCAGGTTTGTACTATGTCGACA AGGGATCCTTATACCAGGCTTGTAGAGTTGCACTTAAGGGCTCTAGGAAAGTGCATCTCTTTACAAGGGAAAGAAGCCAATCTTGCTGCCCATGATTCTG AAACGAGTTCTAAAATCATGCTGGGACATTCAGGATCTCTTGAAGTATCACAAAGCTACGGTCCACGCTACTTGGATGAACTCAAATCAAGATTGAGATT GTCTTTTAAAGTGCTTGTAAGAAAGTCATCAGAGTGGCACTTGCGGTCTGCAGTACAGACTGTAGAGAAGGCACTGGTAGGAGTCCACGAACGTTATTCG GCAATCTATCAAATAACGCTGGGAGGTCCAGACGGCGGAAAGGTTTGCCCCACTGTTGCTGCCGGCATAGATTCCTTGGATCTCATTCTCGAATATGTTT CAGGCCGCAAACCGATGAATGTGGTTAAGAAACACATTCAAAGCCTACTTTCTGCATTATTCAACATTATCTTACACCTGCAAGGTCCCTTAATTTTCAA CAGAAGATCAAATTCTGGTAGAGATGGTGTTTTTCCGGATCCGGGGGCAGTTATTCTCATGTCTGCTGAAGTACTCACAAGGGTGTCCGCGAAGTGTACT CTGTTCCATTTAGAATCCTCGCATGTAGCGCAATCATTACACGTACCTGCTGCACTGTTTGAAGACTTCAGTAAGCTCATGGATCCTTCCATTGTAGATC GACGATTCTCTATCAATTTATATGCTGCGTGTTGCCGATTGTTGTCGACTGTTGTAAAGTATCATAAAAGCGAGTCGGAATGTAGCGTGGCCCTCCTCCA AGAGTCTTCCTCTGTGCTGCTACACTCTTTGGAAACGGTCAATACTGATTCAGACGTTGGCAGAGGTTACTTCTCATGGAACACTGATGAGGCAGTGAAA TGCGCCTGCTTTTTTCGAAGGATCTATGAAGAGCTACGACAGCAGAGAGATGTTTTCGGGAAGTACTGTTCGAAGTTCTTATACAGTTACATATGGGTTT ATTCGGGCAACGGTCCTCGTAAAGCTGGCATCAAAAGGGAACTAGACGAAGCCCTTAAACCTGGCGTTTACGCGCTGATCGATGCTTGTTCTGTTGAAGA TCTCCAAAACCTGCACAATGCATTTGGAGAGGGTCCTTGCAGAAACACATTAGCAGCTCTGCAACACGACTACAAACTGAACTTCCAGTATGGAGGAAAA GTCTGA
AA sequence Show only first row Show all	>Lus10007572 pacid=23148108 polypeptide=Lus10007572 locus=Lus10007572.g ID=Lus10007572.BGIv1.0 annot-version=v1.0 MAGSSVKKSEKQKNKRKLVSTSDKKDRPSKSARTDDSKHRKVRHDEVPEEAVNSKSDELGSSFELRGRAWRNLDLILLLEKNGVDISKKVEVAYDFVKWR GKGGADDDDEEEIETVKVARLVVFLNDWVQTQLISTHKKLEAREACLDYRCWAILKFCLEESLRSQASLTFHRNLIRALGCVAGNMCNSSAELSRSGNDE LEFRTVVFDCVSHMFGSHCGLSNENLALWVSTVQIVAGLVKQICGEKVGCGDLDIVALKFSSLVLDAFANFLKAHPTRKNGFRDFVNEILDPLLSLLGVL HNKLDGENPGVTRKLLCAVEEILANGIFHQTHIDEFLSLQSTRKYASADGGDQKELRTEPISYHRHFFEKLEEVMAAKEESSSNSLGQLFHILVDRVKKK KTAQPLYGDAKKNEKTESSKHIPLTVSETVPNCLNAEKRKSIFDFFVQIMEPLLCKMNVYLEAKLELGPMLLDVHRTMKSINVLLGSFLKEKFYMKAEDT TGGACLNFLKQVYDTILSLATGILRFFIHDVDAKEKTFNLLARELLIAVGYLLEIEYEVTNNDLTSLWHMILSYFAVGCECKSAPDQESFTFLGVRLGCQ ILNIYSELRQVTSAISTFCTAIRLVVTYENDATANQKDHIKFSSSWFPQNTFGKTLDLLLSSQAFRLAMHNAIKCLPEGQASDCVQKLCVEVSQSMQWIK DSASVEDHVKGNKASKRSHRTLYFDLQEEIFGRLSEVYTVVLESLTVTAGNCTLVERCLKDLVATISPCMSTLVGLEPDSVNQFIHSVTGRGRYRIKNGT FKCGHSGHWVILFFLHLHMSCRSLYRQVLSLLPPRLSRKMSEAVGDSLTAYSGKDWMDRTEWTVEGYFSLILQPSASLLSVIQSTSDFCSRTSTADFSPL LYTYHAAAFQRLHDLNRQIKSLEYILDGNDKTVKNKLVDDSDASLYRKRSRKLGKRISVLKQEATDLTEYSMSCLSLVVDGQLSYDLSSEWNWSVCSIQK TSLPIAFWWLVCRNIDVWAIHASKKMLKTFLSNLISTSLPYMGKQHGNEAHSLNTISLGHISSELLMDSNLYEHKFVCRLFTSRFLRLLEDSVVSLSGDL MFMDEEILSSCIDWPKVLKELGNWPAVVSKSKLFGDKYSSDEEKVFKDECPYSVVLNSTACQKLLNLLCWLPKGWMNSKSFSLSITYVLNLERVLIGKLL TCHRNWSYKQQELLKLLLCCRRSLKYTVMAFCEENIGSRSSHMPVFSEDIYAILWLLKSVSAVAGLQENLPQDYIDEVRDKIFSMTDHTSYIFLTLSKYH SFCAFSTLLEGKASKENVCSTDDQESIDSDESSPCSEEVVASKSFRITAESLKKESEGFLNSLNVLLSNDCSGDGVSAANLQKLSSAVSCFSGFLWGLAS VYNDAHIIDNELQKKFLLSKPDLVATLNSCVSAFSDFVRACLFMFPAEDRHQPESTSDSPDYRKPDGSGGLLDAWRLASKTSVKTGISCSKQQNSLSEDD SFQISPVKYPLQSLIEGKHPEAGNLIRQLLLASSAILKLNLLMKCTPCSALVSSSISVSESLLLKFIDTHEVSKPHLIIWLDGVLKYLEELGSQVCTMST RDPYTRLVELHLRALGKCISLQGKEANLAAHDSETSSKIMLGHSGSLEVSQSYGPRYLDELKSRLRLSFKVLVRKSSEWHLRSAVQTVEKALVGVHERYS AIYQITLGGPDGGKVCPTVAAGIDSLDLILEYVSGRKPMNVVKKHIQSLLSALFNIILHLQGPLIFNRRSNSGRDGVFPDPGAVILMSAEVLTRVSAKCT LFHLESSHVAQSLHVPAALFEDFSKLMDPSIVDRRFSINLYAACCRLLSTVVKYHKSESECSVALLQESSSVLLHSLETVNTDSDVGRGYFSWNTDEAVK CACFFRRIYEELRQQRDVFGKYCSKFLYSYIWVYSGNGPRKAGIKRELDEALKPGVYALIDACSVEDLQNLHNAFGEGPCRNTLAALQHDYKLNFQYGGK V

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30150			unknown protein		Lus10007572 [exp]	0	1
AT4G38760			Protein of unknown function (D...		Lus10007578 [exp]	2.0	0.9560
AT1G16480			Tetratricopeptide repeat (TPR)...		Lus10017082 [exp]	3.6	0.9250
AT5G40820		ATATR, ATRAD3, ...	ARABIDOPSIS THALIANA ATAXIA TE...		Lus10023991 [exp]	4.0	0.9484
AT4G30150			unknown protein		Lus10012174 [exp]	5.0	0.9427
AT4G17610			tRNA/rRNA methyltransferase (S...		Lus10001005 [exp]	5.0	0.9086
AT4G04940			transducin family protein / WD...		Lus10035842 [exp]	5.2	0.9475
AT4G27010		EMB2788	EMBRYO DEFECTIVE 2788, unknown...		Lus10041555 [exp]	5.9	0.9389
AT1G68990		MGP3	male gametophyte defective 3 (...		Lus10019207 [exp]	6.3	0.9298
AT5G64420			DNA polymerase V family (.1)		Lus10025659 [exp]	7.3	0.9190
AT5G51200		EMB3142	EMBRYO DEFECTIVE 3142, Protein...		Lus10030088 [exp]	7.7	0.9457

Compare expression of checked genes

Lus10007572 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.