Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21180 50 / 2e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012173 [exp] 123 / 3e-37 AT2G21180 106 / 2e-30 unknown protein Lus10026283 [exp] 85 / 5e-22 AT2G21180 99 / 2e-27 unknown protein Lus10042391 [exp] 81 / 3e-19 AT2G16595 182 / 2e-56 Translocon-associated protein (TRAP), alpha subunit (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G167700 [exp] 65 / 2e-14 AT2G21180 91 / 2e-24 unknown protein Potri.009G129200 [exp] 47 / 2e-07 AT2G21180 55 / 2e-10 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007573 pacid=23148104 polypeptide=Lus10007573 locus=Lus10007573.g ID=Lus10007573.BGIv1.0 annot-version=v1.0 ATGCATTACTACAGAAGCAGGAGCGACTCGTTCTTCGACTCGTTCACCCTATACCCGCTCCCGTACCCGGTGCTCCTCCTCCTCGCTGTGATCTTCATCT TCCTCGGCGGATCCTGGTACTTCAGCTACGAGGAGCTCGTCGAATCCACCGAATCGCAGTTCGGCTGGGCTCTGTTTCTCGTCCCGGTGATCCTCATCTT CCTCGTGCAGTGGCTATCCTCCTTCGACAGCGCCGGGATGTTCAGTCTCTCTCGCCGGCGGACTCACTTCTACCAGCAGCCGTCGTCGGACGGCGGAGGT GCCTCGCCCTGGGGAGTCGCGGCGTTGATCGTTGTCCTGCTTATTCTGTTGCAGTATCAGTCCGCTTTTCTTGACAGCTGGTTCTTCTGA
AA sequence Show only first row Show all	>Lus10007573 pacid=23148104 polypeptide=Lus10007573 locus=Lus10007573.g ID=Lus10007573.BGIv1.0 annot-version=v1.0 MHYYRSRSDSFFDSFTLYPLPYPVLLLLAVIFIFLGGSWYFSYEELVESTESQFGWALFLVPVILIFLVQWLSSFDSAGMFSLSRRRTHFYQQPSSDGGG ASPWGVAALIVVLLILLQYQSAFLDSWFF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21180			unknown protein		Lus10007573 [exp]	0	1
AT2G21180			unknown protein		Lus10012173 [exp]	2.6	0.9389
AT5G01820		PKS24, CIPK14, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10025245 [exp]	7.2	0.8949
AT4G25670			unknown protein		Lus10014961 [exp]	7.2	0.9165
AT2G47590		PHR2	photolyase/blue-light receptor...		Lus10007880 [exp]	11.1	0.8687
AT4G28290			unknown protein		Lus10033693 [exp]	13.7	0.8564
AT1G17620			Late embryogenesis abundant (L...		Lus10037638 [exp]	15.8	0.9167
AT1G18265			Protein of unknown function, D...		Lus10007082 [exp]	16.3	0.9179
AT3G07390		AIR12	Auxin-Induced in Root cultures...		Lus10025879 [exp]	17.6	0.9143
AT5G16200			50S ribosomal protein-related ...		Lus10028496 [exp]	19.8	0.8718
AT5G60850	DOF	OBP4, AtDof5. 4	OBF binding protein 4 (.1)		Lus10034652 [exp]	22.4	0.8975

Compare expression of checked genes

Lus10007573 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.