Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54910 803 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT3G18600 328 / 3e-102 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G65900 324 / 4e-100 DEA(D/H)-box RNA helicase family protein (.1) AT1G71370 259 / 2e-76 DEA(D/H)-box RNA helicase family protein (.1) AT5G05450 249 / 1e-72 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G08620 236 / 3e-68 ATRH25, STRS2 STRESS RESPONSE SUPPRESSOR 2, RNA HELICASE 25, DEA(D/H)-box RNA helicase family protein (.1) AT5G63630 238 / 4e-67 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G08610 232 / 2e-64 PDE340 PIGMENT DEFECTIVE 340, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G40700 225 / 1e-63 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G60990 209 / 3e-59 DEA(D/H)-box RNA helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012172 [exp] 1411 / 0 AT5G54910 865 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10009616 [exp] 341 / 1e-106 AT3G18600 721 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10027240 [exp] 338 / 9e-106 AT3G18600 748 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038950 [exp] 336 / 8e-105 AT3G18600 748 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10008989 [exp] 275 / 2e-83 AT3G18600 508 / 2e-177 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10004017 [exp] 250 / 1e-72 AT5G63630 797 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10009838 [exp] 241 / 2e-69 AT5G05450 721 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10030265 [exp] 247 / 4e-68 AT3G61690 1089 / 0.0 nucleotidyltransferases (.1) Lus10012633 [exp] 224 / 1e-63 AT5G08610 719 / 0.0 PIGMENT DEFECTIVE 340, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G423300 [exp] 990 / 0 AT5G54910 858 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.001G250700 [exp] 345 / 3e-108 AT3G18600 740 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.009G045300 [exp] 338 / 5e-106 AT3G18600 747 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G073100 [exp] 248 / 3e-72 AT5G05450 837 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G068800 [exp] 220 / 3e-63 AT5G60990 656 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.019G059100 [exp] 221 / 2e-62 AT2G40700 814 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G169800 [exp] 223 / 6e-62 AT5G63630 810 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G097700 [exp] 223 / 9e-62 AT5G63630 768 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G249100 [exp] 207 / 7e-59 AT5G60990 619 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.005G185900 [exp] 210 / 3e-57 AT1G77030 1106 / 0.0 hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10007574 pacid=23148089 polypeptide=Lus10007574 locus=Lus10007574.g ID=Lus10007574.BGIv1.0 annot-version=v1.0 ATGGCGGGCATGGGAGACGGCTACGTCGGCACGGCGCAGAACGCCGTGAGGATCCGCCGTCTGGAGAAGCAGCTAGGAGCGGAGCGTCGGAAAATCGCGA AGCTGAAGGCCAAGTCCGCGTCCGGTAATGGCCAGACCGGGCTTCTCCAGCTCGGTTCAAGTATATCGGAGAATAAGATTGAAGAAGAGGAGAAGAAGAA GCTTCAGAAGCTACGACAAGAGGGGGAGGAACCGCAGCTAGCTAAACGGAAGAACATGGTAACCAAATCGAAGTCGAATGCCAAGGCAATCCGACAGGAG CGGCGAACGGCCGAACTGGATGAAATATCCTTACTGAAGGAGTGGATTGAATCGCAAAAACCTGAATCCGGATCCAACCCGCTTGCCCTCAAACCACATC CGGACAATGCACCAGTCGGCCGCCTCCAAGATGGCAGCTTCTCTGCTTATTCTGCTGCGATGAAGTTTCGTGAATTGCCGTTGTCGAAGAAGACGATTGA TGCTCTGACGAAGAGCGGTTACGTCAACATGACTGAGATTCAAAGAGCTTCCTTGCCCCACGCCCTCTGTGGCAGGGATGTTCTTGGTGCCGCTAAAACT GGCTCCGGCAAAACTTTGGCTTTTGTTATCCCTGTGCTGGAGAAGTTACACAATGAGAGGTGGGGTCCAGAGGATGGAGTAGGGAGCATTATAATCTCAC CGACAAGGGAACTGGCTGGCCAGCTGTTTGATGTGCTGAAAGCTGTTGGCAAGTTCCACAGCTTCAGTGCTGGTTTGTTGATCGGTGGTCGGAAGGAGGT TGACATGGAGAAGGAGCGTGTAAATAAACTCAACATACTGGTTTGTACGCCTGGTCGTCTTCTTCAGCATTTGGATGAGACTCCCAACTTCAATTGCTCT CAAGTTCAGATTTTGGTTCTGGACGAGGCAGATCGCATTCTCGATGTTGGCTTTAAGAAGTCTTTGAATGCAATTGTTTCACAGCTTCCTAAGCACAGAC AAACTTTTCTTTTCTCTGCTACGCAAACAAAGTCTGTCCAGGATCTTGCAAGGCTAAGTTTGAAGGACCCAGAGTACATCAGTGTTCATGAGAAGGCCGA TTCTGCTACCCCTAGTCGGTTGCAGCAGACAGCGATGAATGTTCCTTTGGATCAAAAGTTAGACATGTTATGGAGTTTTGTCAAGGCACATCTCAACTCC AAAATCCTTGTTTTTCTTTCTACTTGCAAACAGGTGAAGTTTGTTTTTGAAGCATTCAAAAAGCTGCGGCCTGGAATTCCACTAAAATGCCTCCATGGGA GGATGAAGCAGGAGAGAAGGTCAATTATTTATTCTCAATTCTGCGAGCAGCGGTCGGTTCTGTTCTCGACCGATGTGGCTGCCAGAGGTCTTGACTTCAA TAAAGCAGTTGACTGGGTTGTCCAGGTGGACTGTCCAGAAGATGTTCCATCCTACATACACAGAGTTGGCCGTACTGCACGATACTTGTCAGGGGGGAGA TCTGTTTTGTTTTTGGCACCATCAGAAATGCAAATGCTTGAAAAGTTGAAAGCTGCCAATATTCCTTTAAAGTTCACAAAGGCTAATAAAACAAAATGGC TGCAACCAGTTTCCGGGCTGCTATCAGCGTTGTTGGTGAAACATTCTGAACTGCAGGAGTTGGCTACAAAGGCCTTTATAAGATACATGCGTTCTATACA CGTTCAGAAAGACAAAGAGGTTTTTGATGTGATGAAATTGCCCATTGATGAATTTGCAGCATCAATGGGTCTGCCACTCACCCCTAAGATACGGTTTGTG GAAAGAAAACTCAAAGGCAAGAGGTTGGCTGGAGAATCTTCTGTTGCTGAAATGGAACCAATAGACATTAAGAAACCAAAGACCACTAGCAAGTTAAAGG AGGAATCCTTGGATATACCAACAGATTTACTCGAGGTAGGGGACTCGGAGGAAGAGGATGTGGAGAAAGATCTCCTTCATTCTAAGCAGACCGGAAATGA GAGCAGTGATAAAGCGATGGAAATAGGAGACACAATGCTTGGAACCCGCATCTCTAAGAAGAAAAAGCTGAAGATCAACATCCATAGACCTGTTGGAACG AGAGTTGTTTTTGATGAAGAAGGGAAAACACTTGCTCCACTGGCAAGGGTGGCTGGGTCAATCAATGCTGAAGATGATTCTTCTTTGCTTGACAAAGAGA AAAGAGCTGAGTATTATCAGAAGATGAGAGAAGAGATGAAGAAAGTGGACAAGGTAGACAAGGTTGTTGACAGCCAACGTCGTAGAGAGAAGCGAATGAA GGAGAAGATAAAGCGGAAGAGAGGACTCGGCGATGATGATGAAGAAGAAGAGGAAGATGAAGATGTATCTGGTTCAGAAGGAGAAGGAACAAATGGAGGG AAGAAATCCAACAAGAGATCAAAGATATATTTCAATAGTTCTGACAGTGATGATGATGAGGGTGGAAAGAAAGACAAAATAGACTCTATATCTCTAGCAG AGCAAGAAGCTCTGGCGCTGAAGCTGTTGAGTAACATGCACCATTAG
AA sequence Show only first row Show all	>Lus10007574 pacid=23148089 polypeptide=Lus10007574 locus=Lus10007574.g ID=Lus10007574.BGIv1.0 annot-version=v1.0 MAGMGDGYVGTAQNAVRIRRLEKQLGAERRKIAKLKAKSASGNGQTGLLQLGSSISENKIEEEEKKKLQKLRQEGEEPQLAKRKNMVTKSKSNAKAIRQE RRTAELDEISLLKEWIESQKPESGSNPLALKPHPDNAPVGRLQDGSFSAYSAAMKFRELPLSKKTIDALTKSGYVNMTEIQRASLPHALCGRDVLGAAKT GSGKTLAFVIPVLEKLHNERWGPEDGVGSIIISPTRELAGQLFDVLKAVGKFHSFSAGLLIGGRKEVDMEKERVNKLNILVCTPGRLLQHLDETPNFNCS QVQILVLDEADRILDVGFKKSLNAIVSQLPKHRQTFLFSATQTKSVQDLARLSLKDPEYISVHEKADSATPSRLQQTAMNVPLDQKLDMLWSFVKAHLNS KILVFLSTCKQVKFVFEAFKKLRPGIPLKCLHGRMKQERRSIIYSQFCEQRSVLFSTDVAARGLDFNKAVDWVVQVDCPEDVPSYIHRVGRTARYLSGGR SVLFLAPSEMQMLEKLKAANIPLKFTKANKTKWLQPVSGLLSALLVKHSELQELATKAFIRYMRSIHVQKDKEVFDVMKLPIDEFAASMGLPLTPKIRFV ERKLKGKRLAGESSVAEMEPIDIKKPKTTSKLKEESLDIPTDLLEVGDSEEEDVEKDLLHSKQTGNESSDKAMEIGDTMLGTRISKKKKLKINIHRPVGT RVVFDEEGKTLAPLARVAGSINAEDDSSLLDKEKRAEYYQKMREEMKKVDKVDKVVDSQRRREKRMKEKIKRKRGLGDDDEEEEEDEDVSGSEGEGTNGG KKSNKRSKIYFNSSDSDDDEGGKKDKIDSISLAEQEALALKLLSNMHH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54910			DEA(D/H)-box RNA helicase fami...		Lus10007574 [exp]	0	1
AT3G09720			P-loop containing nucleoside t...		Lus10013644 [exp]	5.8	0.9388
AT3G03340		UNE6	unfertilized embryo sac 6, LUC...		Lus10020225 [exp]	6.5	0.9128
AT1G10180			unknown protein		Lus10018297 [exp]	7.6	0.9093
AT1G69070			unknown protein		Lus10036815 [exp]	8.9	0.9239
AT1G77030			hydrolases, acting on acid anh...		Lus10028644 [exp]	12.4	0.9249
AT5G27120			NOP56-like pre RNA processing ...		Lus10004143 [exp]	13.5	0.9260
AT3G20330		PYRB	PYRIMIDINE B (.1)		Lus10013346 [exp]	20.2	0.9231
AT1G14610		VALRS, TWN2	VALYL TRNA SYNTHETASE, TWIN 2,...		Lus10034788 [exp]	20.7	0.9187
AT5G10920			L-Aspartase-like family protei...		Lus10002606 [exp]	22.4	0.9247
AT2G26140		FTSH4	FTSH protease 4 (.1)		Lus10013521 [exp]	22.8	0.8990

Compare expression of checked genes

Lus10007574 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.