Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21170 466 / 3e-167 PDTPI, TIM PLASTID ISOFORM TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1.2) AT3G55440 298 / 2e-101 CYTOTPI, ATCTIMC, TPI CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012171 [exp] 560 / 0 AT2G21170 481 / 5e-173 PLASTID ISOFORM TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1.2) Lus10040807 [exp] 275 / 1e-92 AT3G55440 449 / 2e-162 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1) Lus10016538 [exp] 275 / 1e-92 AT3G55440 449 / 2e-162 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1) Lus10005461 [exp] 273 / 9e-92 AT3G55440 454 / 4e-164 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1) Lus10004963 [exp] 275 / 2e-89 AT3G55440 426 / 1e-149 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G168000 [exp] 482 / 2e-173 AT2G21170 489 / 5e-176 PLASTID ISOFORM TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1.2) Potri.009G129500 [exp] 471 / 3e-169 AT2G21170 479 / 8e-172 PLASTID ISOFORM TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1.2) Potri.009G031200 [exp] 291 / 9e-99 AT3G55440 358 / 4e-126 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1) Potri.001G240300 [exp] 287 / 2e-97 AT3G55440 377 / 1e-133 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1) Potri.010G203500 [exp] 269 / 2e-90 AT3G55440 419 / 5e-150 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1) Potri.008G056300 [exp] 264 / 2e-88 AT3G55440 400 / 1e-142 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF00121 [flax] [poplar] TIM Triosephosphate isomerase
Representative CDS sequence Show only first row Show all	>Lus10007575 pacid=23148095 polypeptide=Lus10007575 locus=Lus10007575.g ID=Lus10007575.BGIv1.0 annot-version=v1.0 ATGGCGGCGATGCTCTCAACCTCACTTGCGGGCCCCAAGTCCGCCGCTGTTTACTCCCCACCTAACTGCTCCGGCCGATCTTCAAATCTTTCTTCTTCCC AGCTCCGTTTGCCATATCATCTTTCAGCTCGTAAGCCTTCCAGAGCCACCGTTGTTGCAATGGCTGGAACCGGAAAGAATGGAACAAAAGACTCCATCAC TAAGCTCGTCTCAGACTTAAACAGTGCAAACTTGGAGTCTGATGTTGATGTTGTCGTAGCGCCGCCATTCGTTTACATCGATCAGGTGAAGTCGTCCTTG ACTGATAGAATCGAGGTATCTGCACAGAACTCTTGGATCAGCAAAGGTGGCGCTTTCACTGGTGAAATTAGCGTGGAGCAACTGAAAGATCTAGGGGCAA AGTGGGTCATTCTCGGGCATTCTGAGCGTAGACACGTTATTGGTGAAGACGATCAGTTCATAGGGAAGAAGGCTGCATATGCCTTGACCGAAGGCCTAGG GGTGATCGCTTGTATCGGAGAACTCTTAGAAGACAGAGAAGCTGGGAAAACTTTCGACGTCTGCTTCACACAGTTGAAAGCTTATGCAGATGCAGTGCCT AGCTGGGACAATGTGGTCATAGCCTATGAGCCGGTATGGGCGATTGGAACCGGTAAAGTGGCATCACCACAGCAGGCTCAAGAAGTTCATGTTGCTGTTC GCGACTGGCTCAAGAAGAACGTCTCTGACGAAGTTGCTTCCAAGACCCGAATCATCTATGGAGGTTCTGTAAATGGTGGCAACTGTGCCGAGCTCGCTAA GCAAGAAGACATTGATGGCTTCCTTGTTGGTGGTGCTTCTTTGAAGGGACCCGAGTTTGCCACCATTGTGAACTCCGTGACATCGAAGAAAGTCACCGCT TGA
AA sequence Show only first row Show all	>Lus10007575 pacid=23148095 polypeptide=Lus10007575 locus=Lus10007575.g ID=Lus10007575.BGIv1.0 annot-version=v1.0 MAAMLSTSLAGPKSAAVYSPPNCSGRSSNLSSSQLRLPYHLSARKPSRATVVAMAGTGKNGTKDSITKLVSDLNSANLESDVDVVVAPPFVYIDQVKSSL TDRIEVSAQNSWISKGGAFTGEISVEQLKDLGAKWVILGHSERRHVIGEDDQFIGKKAAYALTEGLGVIACIGELLEDREAGKTFDVCFTQLKAYADAVP SWDNVVIAYEPVWAIGTGKVASPQQAQEVHVAVRDWLKKNVSDEVASKTRIIYGGSVNGGNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVTA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21170		PDTPI, TIM	PLASTID ISOFORM TRIOSE PHOSPHA...		Lus10007575 [exp]	0	1
AT1G29930		LHCB1.3, CAB140...	LIGHT-HARVESTING CHLOROPHYLL A...		Lus10023322 [exp]	2.0	0.9179
AT1G53280		AtDJ1B	DJ-1 homolog B, Class I glutam...		Lus10009525 [exp]	2.4	0.8928
AT2G47450		CPSRP43, CAO	CHLOROPLAST SIGNAL RECOGNITION...		Lus10023973 [exp]	2.8	0.9041
AT3G07480			2Fe-2S ferredoxin-like superfa...		Lus10009565 [exp]	4.0	0.8882
AT3G25580			Thioredoxin superfamily protei...		Lus10013889 [exp]	4.2	0.8744
AT2G34620			Mitochondrial transcription te...		Lus10014567 [exp]	7.7	0.8666
AT3G43720			Bifunctional inhibitor/lipid-t...		Lus10008401 [exp]	8.2	0.8586
AT1G15710			prephenate dehydrogenase famil...		Lus10011483 [exp]	8.4	0.8719
AT5G65250			unknown protein		Lus10000635 [exp]	8.4	0.8626
AT1G51370			F-box/RNI-like/FBD-like domain...		Lus10027020 [exp]	11.0	0.8573

Compare expression of checked genes

Lus10007575 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.