Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21150 479 / 3e-171 XCT XAP5 CIRCADIAN TIMEKEEPER, XAP5 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012170 [exp] 555 / 0 AT2G21150 520 / 0.0 XAP5 CIRCADIAN TIMEKEEPER, XAP5 family protein (.1) Lus10007574 [exp] 97 / 8e-22 AT5G54910 862 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10012172 [exp] 76 / 1e-14 AT5G54910 865 / 0.0 DEA(D/H)-box RNA helicase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G129700 [exp] 498 / 9e-179 AT2G21150 507 / 0.0 XAP5 CIRCADIAN TIMEKEEPER, XAP5 family protein (.1) Potri.004G168400 [exp] 491 / 7e-176 AT2G21150 525 / 0.0 XAP5 CIRCADIAN TIMEKEEPER, XAP5 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04921 [flax] [poplar] XAP5 XAP5, circadian clock regulator
Representative CDS sequence Show only first row Show all	>Lus10007576 pacid=23148080 polypeptide=Lus10007576 locus=Lus10007576.g ID=Lus10007576.BGIv1.0 annot-version=v1.0 ATGGCGGGGATGGGAGACGGCTACGTCGGCACGGCGCAGGATGCCGTGAGGATCCGCCGCCTGGAGAAACAGCGAGAAGCGGAGCGCCGGAAAATCGAGG AGCTAAAGACCAAGTCCGCCTCCGGTAATGGCCAGACTGGGCTTCTCCAGTTTGGTTCAAGTACATCGGAGATTCTGGAGACGGCGTTTAAGAAGGAGAC TGTTGGGTTGGTTACGAGGGAGCAGTATGTAGAGAAGAGAGTTACCATACAGAATAAGATTGATGAAGAGGAGAAGGAGAAGCTTCAGAAGCTACGACAA GAGGAGGAAGAAGCGCAGCTAGCTAAACGGAAGAAGAGGAAGATTAGAGGGAATTCGAAGCTGTCTTTCGCTGATGATTTCGAGGATGGAGTGGAAGAGG AAGATGATGAAAACGAAAATCCAGGTATGAATAAGTTGGCTCGTGGAATGTTCGGCAAAGATCCCACTGTAGAAACAAGCTTTTTGCCTGACAGTGAGAG GGAGGCTGAGGAGCAAGCTGAGCGTGAAAGGCTGCGGAAACAATGGGTTCGCGAGCAGGAGCAGATTAAAAATGAAGCCCTTCAAATTACTTACAGTTAC TGGGATGGAACAGGCCATCGAAGGACAATCCAGTGCCGCAAAGGTGATAGCATAGGGGAGTTTTTGCGGACTGTCCAGCAGCAACTTGCACCTGAGTTCA GAGAAATCAGAACAACTTCTGTTGAGAATTTACTTTACGTGAAAGAAGATCTTATCATTCCACATCAACACAGCTTCTACGAGCTCATAGTCAACAAAGC AAGAGGCAAAAGTGGACCGCTTTTCCACTTCGATGTCCACGAGGATGTGCGAACCATTGCTGATGCAACCATTGAAAAGGATGAGTCTCATGCTGGTAAA GTTGTGGAGAGGCACTGGTACGACAAGAACAAGCATATATTCCCTGCATCAAGATGGGAGATATATGACCCTTCAAGGAAGTGGGAGCGATACACCATCC ATGGAGATTAA
AA sequence Show only first row Show all	>Lus10007576 pacid=23148080 polypeptide=Lus10007576 locus=Lus10007576.g ID=Lus10007576.BGIv1.0 annot-version=v1.0 MAGMGDGYVGTAQDAVRIRRLEKQREAERRKIEELKTKSASGNGQTGLLQFGSSTSEILETAFKKETVGLVTREQYVEKRVTIQNKIDEEEKEKLQKLRQ EEEEAQLAKRKKRKIRGNSKLSFADDFEDGVEEEDDENENPGMNKLARGMFGKDPTVETSFLPDSEREAEEQAERERLRKQWVREQEQIKNEALQITYSY WDGTGHRRTIQCRKGDSIGEFLRTVQQQLAPEFREIRTTSVENLLYVKEDLIIPHQHSFYELIVNKARGKSGPLFHFDVHEDVRTIADATIEKDESHAGK VVERHWYDKNKHIFPASRWEIYDPSRKWERYTIHGD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21150		XCT	XAP5 CIRCADIAN TIMEKEEPER, XAP...		Lus10007576 [exp]	0	1
AT1G17330			Metal-dependent phosphohydrola...		Lus10040985 [exp]	1.4	0.9315
AT3G62140			unknown protein		Lus10038035 [exp]	2.0	0.9281
AT4G14965		ATMAPR4	membrane-associated progestero...		Lus10042022 [exp]	3.2	0.8955
AT3G62140			unknown protein		Lus10009976 [exp]	4.5	0.9006
AT4G38360		LAZ1	LAZARUS 1, Protein of unknown ...		Lus10022626 [exp]	7.7	0.8939
AT1G64750		DSS1(I), ATDSS1...	deletion of SUV3 suppressor 1(...		Lus10030906 [exp]	7.9	0.8873
AT2G39740		HESO1	HEN1 suppressor 1, Nucleotidyl...		Lus10030154 [exp]	8.8	0.9040
AT5G10070			RNase L inhibitor protein-rela...		Lus10002091 [exp]	9.7	0.8752
AT4G28706			pfkB-like carbohydrate kinase ...		Lus10011270 [exp]	10.4	0.8321
AT5G41240		GST10B, ATGSTT2	glutathione S-transferase THET...		Lus10000606 [exp]	12.6	0.8752

Compare expression of checked genes

Lus10007576 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.