Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16595 265 / 3e-89 Translocon-associated protein (TRAP), alpha subunit (.1) AT2G21160 249 / 8e-83 Translocon-associated protein (TRAP), alpha subunit (.1), Translocon-associated protein (TRAP), alpha subunit (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012169 [exp] 451 / 1e-162 AT2G16595 277 / 3e-94 Translocon-associated protein (TRAP), alpha subunit (.1) Lus10026282 [exp] 335 / 7e-117 AT2G16595 254 / 5e-85 Translocon-associated protein (TRAP), alpha subunit (.1) Lus10042391 [exp] 244 / 3e-80 AT2G16595 182 / 2e-56 Translocon-associated protein (TRAP), alpha subunit (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G168500 [exp] 357 / 2e-125 AT2G16595 259 / 4e-87 Translocon-associated protein (TRAP), alpha subunit (.1) Potri.009G129800 [exp] 330 / 8e-115 AT2G21160 245 / 2e-81 Translocon-associated protein (TRAP), alpha subunit (.1), Translocon-associated protein (TRAP), alpha subunit (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03896 [flax] [poplar] TRAP_alpha Translocon-associated protein (TRAP), alpha subunit
Representative CDS sequence Show only first row Show all	>Lus10007577 pacid=23148128 polypeptide=Lus10007577 locus=Lus10007577.g ID=Lus10007577.BGIv1.0 annot-version=v1.0 ATGAACAATCTTAGGGTTTTCTTCCTCGCTCTCCTCCTCCTCGCCTCTCCTCTTCTCCAAGTTGCTAGATGCGATGAAGATGCAGAGGCGGAGGCGGCTG CTGAAACAGTGAATTCTGCTGAAGACGCAACAGATCTTGGGATCGTTGGTTCTGAAGCTGATGCTCAGGATTTTGGTGATGAGAATTTTGCTCCAGCTCC TGGGATTGAAACTGTCTGTGTCTTCCCCAAGAATAGTGCCAAGACCATACCAGCTGGACAAGAGTCGGAGCTTCTCGTAGGACTGAAGAATGACGGAGAA TCTAGCATTAATGTTATTGCGATCAAGGCCAGTGTTCATCTTCCCTTTGATCACCGTCTCCTTGTTCAGAATCTGACCGCTCAGGCATTCAACAATGCAA CTGTTCCGGCCTCAGCACAAGCTACCTACCCGTACATTTTTGCCGTGAGCAAGTTCCTCCAGGCTGGAACCTTCGATCTCGTAGGCACCATCATTTATGA AATAGACCAGCAACCTTACCAGAGCACATTCTACAACGGCACTGTCGAAGTCATTGAAGTTGGTGGTCTCCTCAGCATGGAGTCTGTTCTTCTCATTACT CTCGGCACTGCTCTTGTTATCCTCTCCGGCATTTGGATTCAATCTCAAATACAGAATCTCTCTAAGAAAACCAAGAGAGCCACAAAGGTTGAAGTCGGTT CTGGGACCAGAGATGCCTCAATGGACGAATGGCTCGAGGGCACTGCATACACTCAGTCCAACAAGCAAAAGAAGAAGAAATAG
AA sequence Show only first row Show all	>Lus10007577 pacid=23148128 polypeptide=Lus10007577 locus=Lus10007577.g ID=Lus10007577.BGIv1.0 annot-version=v1.0 MNNLRVFFLALLLLASPLLQVARCDEDAEAEAAAETVNSAEDATDLGIVGSEADAQDFGDENFAPAPGIETVCVFPKNSAKTIPAGQESELLVGLKNDGE SSINVIAIKASVHLPFDHRLLVQNLTAQAFNNATVPASAQATYPYIFAVSKFLQAGTFDLVGTIIYEIDQQPYQSTFYNGTVEVIEVGGLLSMESVLLIT LGTALVILSGIWIQSQIQNLSKKTKRATKVEVGSGTRDASMDEWLEGTAYTQSNKQKKKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16595			Translocon-associated protein ...		Lus10007577 [exp]	0	1
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10013271 [exp]	3.5	0.9526
AT1G53240		mMDH1	mitochondrial malate dehydroge...		Lus10013680 [exp]	3.6	0.9595
AT3G56130			biotin/lipoyl attachment domai...		Lus10040959 [exp]	6.0	0.9540
AT2G14835			RING/U-box superfamily protein...		Lus10012365 [exp]	7.1	0.9307
AT5G08300			Succinyl-CoA ligase, alpha sub...		Lus10040992 [exp]	7.2	0.9521
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10030794 [exp]	8.8	0.9416
AT2G40620	bZIP	AtbZIP18	Basic-leucine zipper (bZIP) tr...		Lus10008605 [exp]	8.9	0.9231
AT2G36460			Aldolase superfamily protein (...		Lus10023870 [exp]	9.2	0.9503
AT5G38830			Cysteinyl-tRNA synthetase, cla...		Lus10034343 [exp]	9.2	0.9454
AT5G36890		BGLU42	beta glucosidase 42 (.1.2)		Lus10020232 [exp]	10.5	0.9236

Compare expression of checked genes

Lus10007577 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.