Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38760 1668 / 0 Protein of unknown function (DUF3414) (.1) AT4G10845 48 / 3e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012168 [exp] 3450 / 0 AT4G38760 1804 / 0.0 Protein of unknown function (DUF3414) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G130000 [exp] 2166 / 0 AT4G38760 1972 / 0.0 Protein of unknown function (DUF3414) (.1) Potri.004G168700 [exp] 486 / 7e-150 AT4G38760 498 / 7e-155 Protein of unknown function (DUF3414) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007578 pacid=23148102 polypeptide=Lus10007578 locus=Lus10007578.g ID=Lus10007578.BGIv1.0 annot-version=v1.0 ATGTCGAGTAATCAGAAGTCAGTCGATTCATCACTCCGGTGGGACTCTTTCTCCTCGCTTCTCGCCGAGCTAGAGAACGCCTCGCCCTCCTCCGACCTTC CTCCGCACCTGGCGACCAAGTTGAAGCAGAATCATGGCTGGTTCGTGGAAACGGTGGCCCGGTTTAAGCCGCCAAATTCCAGTTCGAAAGAGGCTCTGAA CTCCGAGAAGTTGAAAATTGGGAATCATGAGCTGACTGTTAAGCCTCAGCTTAGAGAGAAAGCTCTCCGTATTAGCTCTTGTGCGTCTTTGGATGAAGTG CAGTCGTATATTCTTGTGGAGAGGTCTCTCAAACACAACGGTTTATCGATCGACTCCATTGCCGAAGAGTATCTCCATGTGGTGCTGCTTGATTACTACA TTGAGCGACAATGCCTACTCAAATGTACTAGGCAAATCCTGATGCATGCGTTGTTTATTGGAATTAGGTCCAAAGGAGAGAATCTTGTTAAGGATCAGAC ATTGAAGCTAATTTCTGATGGATTGGAGAATAAATTGGTCTCTGTTCTTCAGGACCTTTTATCTGTCAGCCATCCTGTCCAGATGGATGTTGACCTTGTC AGTTTGTGGGCTGAAGAGACACTAATTGAAGACAATTTGGTCTTGGACATTCTTTTCCTGATATATTATGAGTCACTCTGCATATGTAATGGTGAGATGT GGAGAAAGATTTGTTCACTATACAAGGGGATTATATCAGGCACTTATAACTTCGGAAAGTTGGCAATATCAACTGAAGCAGGCAAATCTTGTTATCAAGC CAAAGTCCAGCTGTTACTCATCCTTATAGAGACTCTGGATCTTGAAAATCTTCTTCAGCTAGTTCACGATGGAACTCCTTTCAGGCCCTTAGTTTGGATG AGGCTAATCCCTGCTTCTGTTTATGGGTTACTACACAGGAATGGAGTGTCCACGTTTACTTACGCCGATATTCAACAAATGGATGCATTAATATCTGATC TTACTGCTACTGAAGAGAAAGAAGTGGCAGGGCTACTTTTTGCATGGGCTGTGTTTATCTGTCTAGTTAGTTCCCTTCCTGTAAAAGAGCAATCAGTTGT GGTAATGGATATCGATCATGTTAGTTATGTACGGCAAGCATTTGATGGAGATGCTTTAAGCTACTTTCTTGAGATTACTGGAAGCGACCTGTTGCAGGAT TCAGATGGACCTGTGGCTGGGTACCGGAGTGTTCTGCGAACAACTATTTCCGCTTTTATTGCATCATATGAAATTAATCTTCAGTTGGAGGATGGTAACC TAAGTCTGATAGTGGATATTCTTTGTAAGATTTATCGTGGAGAGGAGTCGCTTTGTGTTCAGTTCTGGGACAGAGAAAGTTTTATTGATGGTCCACTCAG GTGTCTTTTGTGCAACTTAGAAGGCGAATTTCCATTTAGGACTATTGAACTCATTCGACTTTTATCATCCCTCTCAGAAGGAAGCTGGTCTGCAGAATGC GTGTATAATTTCCTTGATAAATCTGTTGGCATATCATCTTTGTTTGAAGTTACTAGTGAGTCCATTGTGGACAGAGCCTCACAGATAGTTGAAACACAGC AGCCATTGCTTGTTCCTGGAATTGAAGGGTTGGTTGTGCCTTCAAAGACTCGTGGGCAGGTTCTGAAAGTTGTGGATGCTAAAACTGCCCTAGTACGCTG GGAGTATATACAATCAGGATTGCTTATCTTGCTTCTGCGCCTGGCACAATCATTACAAAGTGAGAGCAACAAAGAACGATTTCTCATTCTTGACCTTCTT AGACGAATGGTGTCCTTTAACACTGGGTGCTCTGCATTGCTTAAAACTACATCTGGGACTTCCGTGCAGGCTGTAACGTTTTCTTTAATGGACGTCGGCA ATTCATTTTATCAGAAAGCAGCTGGACTAAGTGGGCAGGTGGAAAAGAATTCGTGGATGGTTGAGATCATTTGTGCAGTTATAAGAAATTCATCTACCAG TTCTGAAGGTGCTGTACAGATGTCAATTGGAGTCGGTATTTTGGCAGAGATGATTAAGGGTGCACCAACTCTTGCTGCTTTGACTGTAAAGGCAAATATA TTTGAGATGGCTTCAAGGACTAGTGTGTTTGAGTTGGGGTATAATAGCTCATCAAGTGGGTCTTGGTTGCCTTCTGGAAAGCTTGCGAAAATGCTCCAAA TTGATTCTGAACTCAACGATTATGATGTCCCATTGGTTATATCGGTTCTTGAGTTTGCTATTGAGCTGGTTGAGAAGAGGGTAGAAAACGATATTGTCCT TGCATTAGTTGTGTTCTGCTTACAGTATGTTCTAGTTAACCATGACTCTTGGAAGTACAAGGTGAAACAAGTTCAATGGAGAGTAACATTGAAGGTCTTG GACTTGACAAAAACATGCATCACAGCAGTCCCATACCTAGAAAAGTTGGGCATTGTCATCCGTGATATGCTGCTTTGGGACTCTTCGATTCACAGTTCTA TCTTTCGGCTTGTCTGTAATACTAAGGAAACATTGGAGAAACTCTACGTCAGTCAGCTCTTTGAATTGACTGAGATTGAAGGATTTCAGCTTGCTATAGG TTCTGCTTTAGATGTTCTGCATCTAATGCTGTATGAATTTTCTAAGGACATTTCAAGCAATACTCCTTTATTTCATCAAGTAGTGCTTTCATCTGCTGGA AAACAAGTTTCTGTTGCTGCTGCTGTTATATCCTTGTTATCTTACTCCCGCAATCCGTCAATACAAGCTGGCGCTGCCAAAGTGCTGGCAATGCTGTTGA TTGCAACTGAAAATTTACGACCACATTTGTCTGGTAATGTGTGGTTTATTCTCGATGATCATCAGATTGCAGATTTGAAACAAATTTTTGGAAGTGGCTT CTCTGAGCTGTTGGAGAAGAATGAAGATCTGTTCATTTCTTTTATGAATGTGCTCACTTCTGCTGCATGTTACAAGCCTGCTTTTCTTGTTGCAATGTTC TCACCCACTGACACCAAACAAGTCAAGTTGGGTGATAGCGTTGAGGCAAAGGTTCCAACCAGTAAATCTTCAAATGAAGCAGCAGAGTCCAAGAAACTAT GTTTAGCAGATGGGTTAATGACATATGTGGAAAGATCTAATGATCTCATCATGAGTAATCCTCGCATGCTGCTGAGTTTTTTGCATTTCATGAAGGCCTT GTGGCAAGGAGGTGCTCAGTATATTGGTATTATGGATTCTTTGAAAAGTTCTGGGAAGTTCTGGACGCACTTGTGCAGTTGCATCTCATCAGTTGCTGCC TACAAAGACGTTTCTCTTGAAAAATTGTCTGCAACCAATGCTCAAAGCTTAGCATACAAATACAAATGTCAGTCTGCAATTTTGGAAATAATGGCTTGTG ACATGTTTCTGGATAAGAAGTTGCTACACGCTGAGTCGCTTTTAAAGGAAGCTTCTCAAAAAGATAAGAGGAATAAAAATGTACTAAGCTCAGAAATATC AAACTTAGATCGTGCCGGGGCAAGAGATACATGGTCAAGTTGGTGTGAGAAATCTATACTTGGCTCCCTGATCAAGACATACACTTCTTGTGAATATGAT AATGAGATCTTTTATCACACAAAGGTCGCGTCCAGCTTGTTTAGTGTCCATGCAATGGTGAAATTAGCAAAAGGGGAAACTGGAAGCTTCTCTGTTTCCT TGCTTGAGAAGATTGGCCGTGACTTCAAAAGTTTATGCGGTCAGCCTGCATTTTCTGATTTAATGGTTCAATATTCACACCATGGTTACAGTGAAGGAGA CGAACTGAACATTTTAATCCTCAACGATCTTTACTATCATCTTCAAGGAGAACTGGAAGGCCGAACAATAGGACCGGGGCCATTCAAAGAGCTTTCACAG TATCTGGCTCGGTCAAATTCTTTGCAGAGTTGTAAAAGGGAGTACGATAATGAACCTCTTGCAAGCACGAAAGAGGTCTATTTGTATGACGTTGAATGCA TAAGGAAAGATTTGGGATTAGAGTTGTGGGATTACACTAGTTGGAAAGCTTCCAAGGGAGTTGCAGATGCTATGCTGGAATCCATGGAGGAAGCAAATTC AATGCTGTTGGTTCTAGGTTCGAAGCTCTGTGCACTACGTGAGTTGACAACTGTCTTCACCATCTTTGTTGACAATTCACTGAAGGAGGATAATCGTGGA ACATTTTCCAACCAACTATGTGTTTCTTGCATCGACCACATCTGCAAACATATCCATGCAGCTATCTCATTAGTAGCTTCGAGCGAGGATTCATCTCGGG ATGTTCTTGCTCTCGTTGAAGCACAAGCTGAATTGCTACTCTGCCTCGTAAGATTTCTAAAGAGCAGATTGCCTCCGTCTACTTGTATACTTGTCTTGAA AACCTCAGCTTCCGGCCTTAAAATTCTCCTTGATTCCAAGTCATATCTCGCCTCACCTACAAAGACTACGACCCTTCTAGTTATGGTCCTTCTATCAGCC CTCCAATTCTGCAAAACTTCCGATACCGGAACGGAAACCGTCGGACTTGCAAACATTTGTATGGGGCTGTTACCTATTTTATGCAAGTGCATTACTGGCG CCGATCACTCTTCCATCAGTCTGACTACCAGTGACCTGATATTGAGATGTTTCTTGACCCCCAACACTTGGCTTCCGCTTATTCGAGAACATCTCCAGCT TCGTCACTTCATCCTAGAGCTGCAAGATGGGAAGTCTTCTTCATCAGCCTTACCAACAAGGTTAAGGTTTCTTCTTACTCTTGCCCGGGTCAGAGGTGGT GCCGAGATGCTCCTTGCTTCCGGCTTCTTATCATCTCTTAGAGTACTGTTCTCTAACTTCTGTGATATCCGGCCTATAGTGAAATCGTCTGACAAAACTG AAAAGCCCCAAGATATCTGGGGTCTTGGTCTGGCTGTCGTCACAGCTATGGTTCATTCTTTGGGAGACAGCTCCGCTTGCAACGATATCGTCAACGACTT AGTACCCTACATTTTCTCCGAGAAGGCTTATGTGATCTCTCACTATCTCAGCCAACCGGAAAATCCCGACATACATGGCAAGAAGAGAGCTCGCGAACAA AACGCACCGACGTCTCTTCTTGCTCTTAAGGAGACAGAGCATACACTCACATTGATGTGCATTCTCGCGAAACGGAGACGTTCGTGGGTTAGGGCAACGA ATGACGTGGATTCACATATCCGGGAGAGGAGTATTCATCTCTTGGCATTCATTAGCCGAGGAGGTCGCCAGCCTGGAGAGTCCACCAGCAAAAGCTCTCT TCTTGCTTGTCCTCCTATGCTGAAGCAAGACTTCGAGTATTCAGAGAAAGCATCGTTTGTAAACAGCAAGCATGGCTGGTTTGCTCTTTCTCCTCGTTGT TGTGCGATGAGTTCCAGATTGCATGCTGCTTCATCGGAGACCGGTACCAGCACGGCTCTCGTAGTAAAAGGTCATACCTTTGGTACAATGAACGGTCCTG CTCCGACATTTTTCTCGGATTTGGTAGCCGTCCAGATGTACAGGGTTGCATATCTTGTGCTGAAGTTCCTCTGTATTGAGGCAAAGGGTGCTGCTGAAAG GTCAGAAGAGCTCGGTTTCGTTGATCTTGCTCACATACCTGAACTCCCAATGCCAGACATATTACACGGCTTACAGGACCAAGCTGTTGCGATAATCTGC GACATATGTGTTAAAAAGACTGCCGATCCTGAAATCCAATCAATCTCCTTGATCCTAATTCAAATCCTGGAGATGGCGTTATACATGGAGCTATCAGTTC TACAGATCTGTGGAATCAGACCCGTATTAGGACGAATGGACGATTTCTCCAAAGGCGCTAAAATGTTGTTCAAAGTGATGGAAGAGCAAGCTTTTCTGAA AGCATCAACGAAATCGCTTAAGCAAATCGTCTCGCTGGTATACCCAGGATTGCTGTAG
AA sequence Show only first row Show all	>Lus10007578 pacid=23148102 polypeptide=Lus10007578 locus=Lus10007578.g ID=Lus10007578.BGIv1.0 annot-version=v1.0 MSSNQKSVDSSLRWDSFSSLLAELENASPSSDLPPHLATKLKQNHGWFVETVARFKPPNSSSKEALNSEKLKIGNHELTVKPQLREKALRISSCASLDEV QSYILVERSLKHNGLSIDSIAEEYLHVVLLDYYIERQCLLKCTRQILMHALFIGIRSKGENLVKDQTLKLISDGLENKLVSVLQDLLSVSHPVQMDVDLV SLWAEETLIEDNLVLDILFLIYYESLCICNGEMWRKICSLYKGIISGTYNFGKLAISTEAGKSCYQAKVQLLLILIETLDLENLLQLVHDGTPFRPLVWM RLIPASVYGLLHRNGVSTFTYADIQQMDALISDLTATEEKEVAGLLFAWAVFICLVSSLPVKEQSVVVMDIDHVSYVRQAFDGDALSYFLEITGSDLLQD SDGPVAGYRSVLRTTISAFIASYEINLQLEDGNLSLIVDILCKIYRGEESLCVQFWDRESFIDGPLRCLLCNLEGEFPFRTIELIRLLSSLSEGSWSAEC VYNFLDKSVGISSLFEVTSESIVDRASQIVETQQPLLVPGIEGLVVPSKTRGQVLKVVDAKTALVRWEYIQSGLLILLLRLAQSLQSESNKERFLILDLL RRMVSFNTGCSALLKTTSGTSVQAVTFSLMDVGNSFYQKAAGLSGQVEKNSWMVEIICAVIRNSSTSSEGAVQMSIGVGILAEMIKGAPTLAALTVKANI FEMASRTSVFELGYNSSSSGSWLPSGKLAKMLQIDSELNDYDVPLVISVLEFAIELVEKRVENDIVLALVVFCLQYVLVNHDSWKYKVKQVQWRVTLKVL DLTKTCITAVPYLEKLGIVIRDMLLWDSSIHSSIFRLVCNTKETLEKLYVSQLFELTEIEGFQLAIGSALDVLHLMLYEFSKDISSNTPLFHQVVLSSAG KQVSVAAAVISLLSYSRNPSIQAGAAKVLAMLLIATENLRPHLSGNVWFILDDHQIADLKQIFGSGFSELLEKNEDLFISFMNVLTSAACYKPAFLVAMF SPTDTKQVKLGDSVEAKVPTSKSSNEAAESKKLCLADGLMTYVERSNDLIMSNPRMLLSFLHFMKALWQGGAQYIGIMDSLKSSGKFWTHLCSCISSVAA YKDVSLEKLSATNAQSLAYKYKCQSAILEIMACDMFLDKKLLHAESLLKEASQKDKRNKNVLSSEISNLDRAGARDTWSSWCEKSILGSLIKTYTSCEYD NEIFYHTKVASSLFSVHAMVKLAKGETGSFSVSLLEKIGRDFKSLCGQPAFSDLMVQYSHHGYSEGDELNILILNDLYYHLQGELEGRTIGPGPFKELSQ YLARSNSLQSCKREYDNEPLASTKEVYLYDVECIRKDLGLELWDYTSWKASKGVADAMLESMEEANSMLLVLGSKLCALRELTTVFTIFVDNSLKEDNRG TFSNQLCVSCIDHICKHIHAAISLVASSEDSSRDVLALVEAQAELLLCLVRFLKSRLPPSTCILVLKTSASGLKILLDSKSYLASPTKTTTLLVMVLLSA LQFCKTSDTGTETVGLANICMGLLPILCKCITGADHSSISLTTSDLILRCFLTPNTWLPLIREHLQLRHFILELQDGKSSSSALPTRLRFLLTLARVRGG AEMLLASGFLSSLRVLFSNFCDIRPIVKSSDKTEKPQDIWGLGLAVVTAMVHSLGDSSACNDIVNDLVPYIFSEKAYVISHYLSQPENPDIHGKKRAREQ NAPTSLLALKETEHTLTLMCILAKRRRSWVRATNDVDSHIRERSIHLLAFISRGGRQPGESTSKSSLLACPPMLKQDFEYSEKASFVNSKHGWFALSPRC CAMSSRLHAASSETGTSTALVVKGHTFGTMNGPAPTFFSDLVAVQMYRVAYLVLKFLCIEAKGAAERSEELGFVDLAHIPELPMPDILHGLQDQAVAIIC DICVKKTADPEIQSISLILIQILEMALYMELSVLQICGIRPVLGRMDDFSKGAKMLFKVMEEQAFLKASTKSLKQIVSLVYPGLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38760			Protein of unknown function (D...		Lus10007578 [exp]	0	1
AT5G51200		EMB3142	EMBRYO DEFECTIVE 3142, Protein...		Lus10030088 [exp]	1.0	0.9682
AT4G30150			unknown protein		Lus10007572 [exp]	2.0	0.9560
AT5G40820		ATATR, ATRAD3, ...	ARABIDOPSIS THALIANA ATAXIA TE...		Lus10023991 [exp]	2.8	0.9594
AT4G27010		EMB2788	EMBRYO DEFECTIVE 2788, unknown...		Lus10041555 [exp]	3.7	0.9451
AT4G22970		RSW4, AESP	RADIALLY SWOLLEN 4, homolog of...		Lus10006990 [exp]	3.9	0.9569
AT3G06530			ARM repeat superfamily protein...		Lus10039121 [exp]	4.9	0.9475
AT1G33410		NUP160, SAR1, A...	ARABIDOPSIS NUCLEOPORIN 160, S...		Lus10039130 [exp]	6.7	0.9441
AT1G06220		GFA1, CLO, MEE5	MATERNAL EFFECT EMBRYO ARREST ...		Lus10043477 [exp]	7.4	0.9552
AT3G48430	JUMONJI	JMJ12, REF6	Jumonji domain-containing prot...		Lus10019482 [exp]	8.8	0.9401
AT4G30990			ARM repeat superfamily protein...		Lus10026222 [exp]	10.1	0.9346

Compare expression of checked genes

Lus10007578 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.