Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16600 284 / 2e-99 ROC3 rotamase CYP 3 (.1.2) AT2G21130 277 / 7e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT4G38740 276 / 1e-96 ROC1 rotamase CYP 1 (.1) AT4G34870 267 / 7e-93 ATCYP1, ROC5 ARABIDOPSIS THALIANA CYCLOPHILIN 1, rotamase cyclophilin 5 (.1) AT3G56070 252 / 9e-87 ROC2 rotamase cyclophilin 2 (.1.2) AT2G29960 223 / 6e-75 CYP19-4, ATCYP5, CYP5 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) AT5G58710 218 / 4e-73 ROC7 rotamase CYP 7 (.1) AT3G63400 218 / 2e-70 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) AT3G55920 212 / 3e-70 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G13120 200 / 4e-65 Pnsl5, ATCYP20-2 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012167 [exp] 318 / 9e-113 AT2G16600 313 / 4e-111 rotamase CYP 3 (.1.2) Lus10017258 [exp] 277 / 1e-96 AT2G16600 308 / 6e-109 rotamase CYP 3 (.1.2) Lus10013552 [exp] 266 / 2e-92 AT2G16600 297 / 1e-104 rotamase CYP 3 (.1.2) Lus10042553 [exp] 252 / 1e-86 AT3G56070 297 / 1e-104 rotamase cyclophilin 2 (.1.2) Lus10022012 [exp] 247 / 9e-85 AT3G56070 295 / 1e-103 rotamase cyclophilin 2 (.1.2) Lus10040666 [exp] 227 / 2e-76 AT5G58710 347 / 2e-123 rotamase CYP 7 (.1) Lus10018238 [exp] 227 / 2e-76 AT2G29960 348 / 4e-124 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Lus10014846 [exp] 216 / 4e-71 AT2G29960 310 / 6e-107 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Lus10020992 [exp] 212 / 2e-68 AT2G15790 598 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G130100 [exp] 303 / 5e-107 AT2G21130 279 / 1e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.004G168800 [exp] 296 / 2e-104 AT2G16600 278 / 4e-97 rotamase CYP 3 (.1.2) Potri.002G021500 [exp] 287 / 9e-101 AT2G16600 278 / 2e-97 rotamase CYP 3 (.1.2) Potri.005G240200 [exp] 285 / 9e-100 AT2G16600 276 / 2e-96 rotamase CYP 3 (.1.2) Potri.019G014396 [exp] 257 / 6e-89 AT3G56070 277 / 1e-96 rotamase cyclophilin 2 (.1.2) Potri.009G046500 [exp] 223 / 1e-74 AT2G29960 323 / 4e-114 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Potri.001G251700 [exp] 217 / 2e-72 AT5G58710 313 / 6e-110 rotamase CYP 7 (.1) Potri.010G189000 [exp] 216 / 6e-72 AT3G55920 303 / 4e-105 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.005G215800 [exp] 224 / 5e-70 AT3G63400 252 / 2e-77 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Potri.002G047200 [exp] 214 / 2e-66 AT3G63400 229 / 1e-66 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0475 [flax] [poplar] Cyclophil-like PF00160 [flax] [poplar] Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Representative CDS sequence Show only first row Show all	>Lus10007579 pacid=23148078 polypeptide=Lus10007579 locus=Lus10007579.g ID=Lus10007579.BGIv1.0 annot-version=v1.0 ATGGCCAACCCCAAGGTTTTCTTCGACATGACCGTCGGCGGCCAGCCAGCCGGCAGGATCGTGATGGAGCTCTACGCCGATGTCGTCCCCAAGACTGCCG AGAACTTCCGCGCCCTCTGCACCGGCGAGAAGGGAGTCGGCAAGTGCGGGAAGCCCCTCCACTACAAGGGATCCAGCTTCCACCGTGTGATCCCCAAGTT CATGTGCCAGGGAGGTGACTTCACCGCCGGAAACGGCACCGGAGGAGAGTCCATCTACGGAGCCAAGTTCAGCGACGAGAACTTCGCCAGGAAGCACACC GGTCCCGGGATCCTCTCCATGGCCAACGCCGGCCCTGGAACCAACGGATCTCAGTTCTTCATCTGTACCGAGAAGACCGAGTGGCTCGACGGGAAGCACG TCGTGTTCGGACAGGTCGTCGAGGGGATGGACGTTGTCAGGGCTATTGAGAAGGTCGGATCTGGATCTGGCAAGACCTCCAAGCCCGTCGTTATTGCCGA TTGCGGTCAGCTCTAA
AA sequence Show only first row Show all	>Lus10007579 pacid=23148078 polypeptide=Lus10007579 locus=Lus10007579.g ID=Lus10007579.BGIv1.0 annot-version=v1.0 MANPKVFFDMTVGGQPAGRIVMELYADVVPKTAENFRALCTGEKGVGKCGKPLHYKGSSFHRVIPKFMCQGGDFTAGNGTGGESIYGAKFSDENFARKHT GPGILSMANAGPGTNGSQFFICTEKTEWLDGKHVVFGQVVEGMDVVRAIEKVGSGSGKTSKPVVIADCGQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16600		ROC3	rotamase CYP 3 (.1.2)		Lus10007579 [exp]	0	1
AT3G26400		EIF4B1	eukaryotic translation initiat...		Lus10011412 [exp]	1.4	0.9380
AT2G04280			unknown protein		Lus10041091 [exp]	2.4	0.9118
AT4G23620			Ribosomal protein L25/Gln-tRNA...		Lus10000590 [exp]	3.2	0.9162
AT1G30580			GTP binding (.1)		Lus10038543 [exp]	5.3	0.9048
AT5G03160		ATP58IPK	homolog of mamallian P58IPK (....		Lus10015078 [exp]	6.5	0.9067
AT1G02816			Protein of unknown function, D...		Lus10010297 [exp]	7.1	0.9073
AT3G25230		ROF1, ATFKBP62	FK506 BINDING PROTEIN 62, rota...		Lus10038216 [exp]	7.7	0.9005
AT4G28230			unknown protein		Lus10031619 [exp]	8.1	0.8968
AT4G05400			copper ion binding (.1.2)		Lus10008331 [exp]	8.5	0.9033
AT2G04280			unknown protein		Lus10036415 [exp]	9.9	0.8715

Compare expression of checked genes

Lus10007579 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.