Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012166 [exp] 122 / 4e-35 AT4G38710 159 / 2e-44 glycine-rich protein (.1.2)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007581 pacid=23148107 polypeptide=Lus10007581 locus=Lus10007581.g ID=Lus10007581.BGIv1.0 annot-version=v1.0 ATGAAGATGAAAGGTGGAGAGGATGATAAAGTGGAAAGAGCCGATAAGGGTTCGAGATGGAGCTTTGGCCGTGTTGGTGCTGAAGAAGTTGTGGAGAAGA GCTGGAGAAAGGCTGTTGATTCTGTCGATGAAAGTTCTGAAGCTGTCGAGAATGGACACCCCGATTCCACCTCGCAGGTTGAAGCTGCCAAGCCAGATGA GAACGGTGACGCCGCTGCTAACCCGGATAAGAACGGTGAGGCTCTCGCTGCTGCCGTGGAGAATTGA
AA sequence Show only first row Show all	>Lus10007581 pacid=23148107 polypeptide=Lus10007581 locus=Lus10007581.g ID=Lus10007581.BGIv1.0 annot-version=v1.0 MKMKGGEDDKVERADKGSRWSFGRVGAEEVVEKSWRKAVDSVDESSEAVENGHPDSTSQVEAAKPDENGDAAANPDKNGEALAAAVEN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10007581 [exp]	0	1
AT1G31830			Amino acid permease family pro...		Lus10012153 [exp]	2.0	0.9181
AT3G59840			unknown protein		Lus10030936 [exp]	4.0	0.8828
AT4G00390	GeBP		DNA-binding storekeeper protei...		Lus10028550 [exp]	4.2	0.8767
AT5G58470		TAF15b	TBP-associated factor 15B (.1....		Lus10026388 [exp]	4.2	0.8760
AT4G39840			unknown protein		Lus10041688 [exp]	7.9	0.8752
AT4G02500		ATXT2, XXT2	XYG XYLOSYLTRANSFERASE 2, ARAB...		Lus10037516 [exp]	8.7	0.8767
AT1G73650			Protein of unknown function (D...		Lus10031343 [exp]	8.8	0.8391
AT2G20690			lumazine-binding family protei...		Lus10017000 [exp]	9.4	0.8684
AT3G20970		ATNFU2, NFU4	ARABIDOPSIS THALIANA NFU DOMAI...		Lus10043440 [exp]	13.4	0.7895
AT4G10040		CYTC-2	cytochrome c-2 (.1)		Lus10008922 [exp]	13.5	0.8639

Compare expression of checked genes

Lus10007581 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.