Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02370 295 / 3e-99 SNARE associated Golgi protein family (.1.2) AT1G12450 172 / 9e-52 SNARE associated Golgi protein family (.1) AT4G12000 152 / 6e-44 SNARE associated Golgi protein family (.1) AT4G22850 149 / 1e-42 SNARE associated Golgi protein family (.1.2) AT1G22850 56 / 1e-08 SNARE associated Golgi protein family (.1) AT1G03260 48 / 3e-06 SNARE associated Golgi protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012163 [exp] 502 / 1e-180 AT2G02370 401 / 4e-141 SNARE associated Golgi protein family (.1.2) Lus10006674 [exp] 166 / 4e-49 AT1G12450 365 / 4e-127 SNARE associated Golgi protein family (.1) Lus10007018 [exp] 166 / 9e-49 AT1G12450 364 / 6e-127 SNARE associated Golgi protein family (.1) Lus10008915 [exp] 162 / 1e-47 AT1G12450 338 / 5e-117 SNARE associated Golgi protein family (.1) Lus10028900 [exp] 142 / 5e-40 AT1G12450 348 / 9e-121 SNARE associated Golgi protein family (.1) Lus10041062 [exp] 54 / 6e-08 AT1G22850 377 / 2e-131 SNARE associated Golgi protein family (.1) Lus10006162 [exp] 54 / 7e-08 AT1G22850 394 / 2e-137 SNARE associated Golgi protein family (.1) Lus10021942 [exp] 47 / 1e-05 AT5G19070 343 / 9e-120 SNARE associated Golgi protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G078700 [exp] 322 / 6e-110 AT2G02370 390 / 2e-136 SNARE associated Golgi protein family (.1.2) Potri.003G151800 [exp] 311 / 1e-105 AT2G02370 377 / 2e-131 SNARE associated Golgi protein family (.1.2) Potri.003G117400 [exp] 166 / 2e-49 AT1G12450 343 / 1e-118 SNARE associated Golgi protein family (.1) Potri.001G114600 [exp] 158 / 3e-46 AT1G12450 317 / 3e-108 SNARE associated Golgi protein family (.1) Potri.019G071900 [exp] 54 / 6e-08 AT1G22850 330 / 8e-113 SNARE associated Golgi protein family (.1) Potri.013G099600 [exp] 52 / 2e-07 AT1G22850 305 / 6e-102 SNARE associated Golgi protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09335 [flax] [poplar] SNARE_assoc SNARE associated Golgi protein
Representative CDS sequence Show only first row Show all	>Lus10007583 pacid=23148067 polypeptide=Lus10007583 locus=Lus10007583.g ID=Lus10007583.BGIv1.0 annot-version=v1.0 ATGTCAGAGACACCGCCTGTGTCGACGAAAGATGGCATACATACCGATCACCACACAAGAGAAGATAGTGAATTTGTTAGGCTTGTCATGTCACACGAAC GAATGCCGATGTCATCACATGTGATGGAACCTCAAACAACTTCAAGGGTCAAGTCTCCCCTCTGGTGGTGCAAAATTCTTTCACTGGCCTTAGTCGCTGG CATAATCCTCTTGATTTCCATCAAATGGGTGCTCCCGTTTCTCTTCGAAAAGGTTCTCTACCCAATAATGAAATGGGAAGCAACTGCCTTTGGCCGTCCA GTCCTTGCTCTCGTCCTCGTCGCTTCTCTTGCATTGTTCCCCGTCTTCTTAATCCCTTCCGGCCCTTCAATGTGGTTGGCTGGGATGATTTTCGGATATG GCATTGGATTCATCATTATCATTGCCGGAACAACCATAGGGATGATTCTTCCTTACTTCATCGGGCTCTTGTTCCGTGAACGTATCCATCAATGGCTAGA GAGATGGCCCAAGAAAGCTGCAATGCTGAGACTTGCCGCAGAAGGCAGCTGGTTCCACCAATTTCGAGTGGTCGCACTCTTCAGAGTATCCCCATTTCCG TACACGATCTTCAACTACGCGATCGTGGTAACCAGTTTGAGGTTCTGGCCTTACATTTGTGGCTCAGTTGCTGGCATGGTGCCGGAAGCTTTCCTTTACA TCTACAGTGGTCGACTAATCAGGACACTAGCTGAAGTGAACTATGGGAACCATCACTTAACCCCGGTGGAGATGGCATACAATATCATCTCGTTCATCGT CACGATCATCACCGTCGTGGCGTTCACCCTCTACACGAGAAGAGCACTGCATCAGCTCGAGAGCGGAGAGCCAGTTTCGCCTGCAATCGTTAGTTACGAG ATGGGTAAGTTGCCACAGGAAAGATCAAACCATATGGTTCTGTCATCTTTTGTATCATGA
AA sequence Show only first row Show all	>Lus10007583 pacid=23148067 polypeptide=Lus10007583 locus=Lus10007583.g ID=Lus10007583.BGIv1.0 annot-version=v1.0 MSETPPVSTKDGIHTDHHTREDSEFVRLVMSHERMPMSSHVMEPQTTSRVKSPLWWCKILSLALVAGIILLISIKWVLPFLFEKVLYPIMKWEATAFGRP VLALVLVASLALFPVFLIPSGPSMWLAGMIFGYGIGFIIIIAGTTIGMILPYFIGLLFRERIHQWLERWPKKAAMLRLAAEGSWFHQFRVVALFRVSPFP YTIFNYAIVVTSLRFWPYICGSVAGMVPEAFLYIYSGRLIRTLAEVNYGNHHLTPVEMAYNIISFIVTIITVVAFTLYTRRALHQLESGEPVSPAIVSYE MGKLPQERSNHMVLSSFVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02370			SNARE associated Golgi protein...		Lus10007583 [exp]	0	1
AT5G58620	C3HZnF		zinc finger (CCCH-type) family...		Lus10018243 [exp]	9.2	0.9612
AT4G04450	WRKY	ATWRKY42, WRKY4...	WRKY family transcription fact...		Lus10015546 [exp]	11.4	0.9634
AT4G24690		AtNBR1	Arabidopsis thaliana next to B...		Lus10017950 [exp]	13.3	0.9572
					Lus10000859 [exp]	14.6	0.9627
					Lus10041163 [exp]	19.7	0.9620
AT5G01250			alpha 1,4-glycosyltransferase ...		Lus10027770 [exp]	20.6	0.9612
AT3G48180			unknown protein		Lus10043469 [exp]	24.2	0.9612
AT4G37420			Domain of unknown function (DU...		Lus10013221 [exp]	24.4	0.9293
AT4G04450	WRKY	ATWRKY42, WRKY4...	WRKY family transcription fact...		Lus10020023 [exp]	33.4	0.9594
AT3G61510		AT-ACS1, ACS1	ARABIDOPSIS THALIANA 1-AMINOCY...		Lus10036396 [exp]	33.8	0.9572

Compare expression of checked genes

Lus10007583 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.