Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49720 547 / 0 TSD1, IRX2, DEC, RSW2, OR16PEP, KOR1 ,AtGH9A1 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) AT4G24260 469 / 4e-162 ATGH9A3 ,KOR3 glycosyl hydrolase 9A3 (.1) AT1G65610 402 / 1e-135 ATGH9A2 ,KOR2 KORRIGAN 2, ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A2, Six-hairpin glycosidases superfamily protein (.1) AT1G75680 221 / 5e-67 ATGH9B7 glycosyl hydrolase 9B7 (.1) AT1G19940 216 / 2e-65 ATGH9B5 glycosyl hydrolase 9B5 (.1) AT1G02800 202 / 6e-60 ATCEL2 cellulase 2 (.1) AT4G02290 197 / 7e-58 ATGH9B13 glycosyl hydrolase 9B13 (.1) AT1G64390 196 / 9e-57 ATGH9C2 glycosyl hydrolase 9C2 (.1) AT4G11050 195 / 3e-56 ATGH9C3 glycosyl hydrolase 9C3 (.1) AT4G23560 189 / 3e-55 ATGH9B15 glycosyl hydrolase 9B15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012162 [exp] 674 / 0 AT5G49720 989 / 0.0 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Lus10026275 [exp] 612 / 0 AT5G49720 986 / 0.0 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Lus10026863 [exp] 426 / 5e-145 AT1G65610 747 / 0.0 KORRIGAN 2, ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A2, Six-hairpin glycosidases superfamily protein (.1) Lus10010029 [exp] 374 / 3e-126 AT5G49720 465 / 1e-158 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Lus10036331 [exp] 347 / 3e-114 AT5G49720 483 / 6e-164 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Lus10018918 [exp] 300 / 5e-96 AT5G49720 423 / 1e-140 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Lus10028619 [exp] 294 / 1e-93 AT5G49720 410 / 3e-135 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Lus10033156 [exp] 230 / 2e-70 AT1G19940 687 / 0.0 glycosyl hydrolase 9B5 (.1) Lus10034515 [exp] 230 / 2e-70 AT1G19940 688 / 0.0 glycosyl hydrolase 9B5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G151700 [exp] 593 / 0 AT5G49720 910 / 0.0 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Potri.001G078900 [exp] 589 / 0 AT5G49720 904 / 0.0 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Potri.008G079500 [exp] 441 / 5e-151 AT1G65610 699 / 0.0 KORRIGAN 2, ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A2, Six-hairpin glycosidases superfamily protein (.1) Potri.010G177300 [exp] 439 / 3e-150 AT1G65610 724 / 0.0 KORRIGAN 2, ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A2, Six-hairpin glycosidases superfamily protein (.1) Potri.005G188500 [exp] 305 / 6e-98 AT5G49720 418 / 9e-139 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Potri.005G237700 [exp] 230 / 2e-70 AT1G19940 678 / 0.0 glycosyl hydrolase 9B5 (.1) Potri.002G023900 [exp] 229 / 6e-70 AT1G19940 672 / 0.0 glycosyl hydrolase 9B5 (.1) Potri.005G115400 [exp] 213 / 5e-64 AT1G19940 586 / 0.0 glycosyl hydrolase 9B5 (.1) Potri.001G092200 [exp] 209 / 2e-61 AT1G64390 951 / 0.0 glycosyl hydrolase 9C2 (.1) Potri.003G139600 [exp] 207 / 5e-61 AT1G64390 999 / 0.0 glycosyl hydrolase 9C2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF00759 [flax] [poplar] Glyco_hydro_9 Glycosyl hydrolase family 9
Representative CDS sequence Show only first row Show all	>Lus10007584 pacid=23148113 polypeptide=Lus10007584 locus=Lus10007584.g ID=Lus10007584.BGIv1.0 annot-version=v1.0 ATGACAATGCTGAGCTGGAGTGTGATCGAGTACAGCGCTAAGTATGAAGCTGTTGGGGAGCTCAATCATATCAAGGACATAATCAAGTGGGGCACTGATT ACCTCCTCAAGACCTTTAACCATACCGCCGATACAATCGACAGGATCGTCTCCCAGGTTGGATCGGGGGACACATCGGGGGGAAGCACTACACCAAATGA TCATTACTGCTGGACGCGACCCGAGGACATCGACTACGAGAGGCCAGTGACCGAGTGCCACACTTGCTCCGATCTTGCTGCAGAAATGGCAGCTGCGCTA GCTTCTGCGTCCATCGTGTTCAAAGACAACAAGGCCTACTCGCAGAAGCTTGTCCACGGTGCTCGGACACTGTTCAAGTTCTCGAGGGACCAGCGTGGGA GGTACAGTGCAGGTAGTGCGGAAGCTGGCACGTTCTACAACTCCACCGGCTACTGGGACGAATTCGTCTGGGCTGGAACTTGGTTATACTATGCAACCGG GAATAACTCCTATCTTTCTTTGGCTACTACTCCCGGTATTGCCAAGCATGCGGGTGCTTTCTGGGGTGGACCCGACTATGGCGTCTTCAGCTGGGACAAC AAGCTTACTGGTGCTCAGGTTCTTCTGAGTCGTCTAAGACTGTTCCTGAGCCCGGGCTACCCGTACGAAGAAATATTAAGGACATTCCATAACCAGACTA GCATTGTCATGTGTTCTTACCTTCCGTATTTCTCAAGCTTCAACAGAACCAAAGGTAACCCATTTTCACTGTCTATTCTAGAGGACATGTATATTGATTA CGTCCTGGGGAAGAACCCTAGGAAGATGAGCTATGTGGTGGGTTTCGGTAACCATTACCCCAAGCACGTCCACCACAGAGGCGCTTCGATCCCCCATAAC AAGGTGAAGTACAGCTGCAAAGGCGGGTGGAAGTGGAGGGACACCAAGAAGCCGAACCCCAACACCCTCGTAGGAGCCATGGTTGCGGGGCCTGACAGGC ACGATGGATTTAAGGATGTACGAATGAACTACAACTACACCGAGCCGACTCTTGCAGGAAATGCAGGACTGGTTGCTGCCCTCATCGCCTTGTCTGGTGA CGGGACGTCTAATATCGATAAGAACACCATATTCTCTGCAGTTCCTCCTATGTTCCCGACTCCTCCTCCTCCTCCAGCACCATGGAAACCATAA
AA sequence Show only first row Show all	>Lus10007584 pacid=23148113 polypeptide=Lus10007584 locus=Lus10007584.g ID=Lus10007584.BGIv1.0 annot-version=v1.0 MTMLSWSVIEYSAKYEAVGELNHIKDIIKWGTDYLLKTFNHTADTIDRIVSQVGSGDTSGGSTTPNDHYCWTRPEDIDYERPVTECHTCSDLAAEMAAAL ASASIVFKDNKAYSQKLVHGARTLFKFSRDQRGRYSAGSAEAGTFYNSTGYWDEFVWAGTWLYYATGNNSYLSLATTPGIAKHAGAFWGGPDYGVFSWDN KLTGAQVLLSRLRLFLSPGYPYEEILRTFHNQTSIVMCSYLPYFSSFNRTKGNPFSLSILEDMYIDYVLGKNPRKMSYVVGFGNHYPKHVHHRGASIPHN KVKYSCKGGWKWRDTKKPNPNTLVGAMVAGPDRHDGFKDVRMNYNYTEPTLAGNAGLVAALIALSGDGTSNIDKNTIFSAVPPMFPTPPPPPAPWKP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Lus10007584 [exp]	0	1
AT1G17270			O-fucosyltransferase family pr...		Lus10003929 [exp]	1.0	0.9725
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Lus10007585 [exp]	1.4	0.9675
AT5G67230		IRX14-L, I14H	IRREGULAR XYLEM 14-LIKE, IRREG...		Lus10041601 [exp]	5.2	0.9661
AT2G01970			Endomembrane protein 70 protei...		Lus10042286 [exp]	6.5	0.9522
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Lus10007497 [exp]	7.3	0.9649
					Lus10043485 [exp]	7.4	0.9654
					Lus10043486 [exp]	7.5	0.9659
AT4G18780		LEW2, IRX1, ATC...	LEAF WILTING 2, IRREGULAR XYLE...		Lus10029245 [exp]	8.4	0.9636
AT1G71070			Core-2/I-branching beta-1,6-N-...		Lus10033379 [exp]	11.1	0.9390
AT3G08500	MYB	ATMYB83	myb domain protein 83 (.1)		Lus10031850 [exp]	12.2	0.9584

Compare expression of checked genes

Lus10007584 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.