Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49720 246 / 6e-79 TSD1, IRX2, DEC, RSW2, OR16PEP, KOR1 ,AtGH9A1 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) AT4G24260 191 / 7e-58 ATGH9A3 ,KOR3 glycosyl hydrolase 9A3 (.1) AT1G65610 150 / 7e-43 ATGH9A2 ,KOR2 KORRIGAN 2, ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A2, Six-hairpin glycosidases superfamily protein (.1) AT4G39000 82 / 3e-18 ATGH9B17 glycosyl hydrolase 9B17 (.1) AT4G38990 76 / 1e-16 ATGH9B16 glycosyl hydrolase 9B16 (.1) AT2G44540 75 / 5e-16 ATGH9B9 glycosyl hydrolase 9B9 (.1) AT2G44560 74 / 8e-16 ATGH9B11 glycosyl hydrolase 9B11 (.1) AT1G02800 74 / 9e-16 ATCEL2 cellulase 2 (.1) AT4G02290 74 / 1e-15 ATGH9B13 glycosyl hydrolase 9B13 (.1) AT2G44550 73 / 3e-15 ATGH9B10 glycosyl hydrolase 9B10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012162 [exp] 268 / 2e-87 AT5G49720 989 / 0.0 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Lus10026275 [exp] 236 / 6e-75 AT5G49720 986 / 0.0 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Lus10026863 [exp] 122 / 1e-32 AT1G65610 747 / 0.0 KORRIGAN 2, ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A2, Six-hairpin glycosidases superfamily protein (.1) Lus10036331 [exp] 90 / 4e-21 AT5G49720 483 / 6e-164 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Lus10008208 [exp] 82 / 3e-18 AT4G02290 812 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10010307 [exp] 77 / 1e-16 AT4G02290 493 / 2e-171 glycosyl hydrolase 9B13 (.1) Lus10013418 [exp] 77 / 2e-16 AT4G02290 625 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10031139 [exp] 75 / 6e-16 AT1G70710 489 / 5e-170 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Lus10001666 [exp] 74 / 1e-15 AT1G02800 600 / 0.0 cellulase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G151700 [exp] 249 / 4e-80 AT5G49720 910 / 0.0 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Potri.001G078900 [exp] 247 / 2e-79 AT5G49720 904 / 0.0 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Potri.008G079500 [exp] 148 / 5e-42 AT1G65610 699 / 0.0 KORRIGAN 2, ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A2, Six-hairpin glycosidases superfamily protein (.1) Potri.010G177300 [exp] 144 / 2e-40 AT1G65610 724 / 0.0 KORRIGAN 2, ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A2, Six-hairpin glycosidases superfamily protein (.1) Potri.002G202400 [exp] 79 / 2e-17 AT4G02290 818 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.014G126900 [exp] 78 / 4e-17 AT4G02290 799 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.003G139600 [exp] 74 / 1e-15 AT1G64390 999 / 0.0 glycosyl hydrolase 9C2 (.1) Potri.001G092200 [exp] 73 / 2e-15 AT1G64390 951 / 0.0 glycosyl hydrolase 9C2 (.1) Potri.008G132700 [exp] 72 / 4e-15 AT1G70710 808 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.001G098800 [exp] 72 / 4e-15 AT4G09740 669 / 0.0 glycosyl hydrolase 9B14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF00759 [flax] [poplar] Glyco_hydro_9 Glycosyl hydrolase family 9
Representative CDS sequence Show only first row Show all	>Lus10007585 pacid=23148115 polypeptide=Lus10007585 locus=Lus10007585.g ID=Lus10007585.BGIv1.0 annot-version=v1.0 ATGAGCATGTACGGGAGGGATCCATGGGGAGGCCCACTGGAGATAAACACGGCGGACTCGGCCACCGACGATGACCGGAGCCGGAACCTCAACGACCTCG ACCGAGCAGCTCTTTCGAATTCCCGTCCTCTAGATGAGACCCAGCAGAGCTGGCTGCTGGGTCCCACCGAGCAGAAGAAGAAGAAGAGGTATGTCGATCT CGGTTGCATCATCGTCAGCCGCAAGATCTTCATCTGGACTTTGGGAACTTTGCTCGCCGCCGGTCTCCTCACCGGACTCATCATCATCATCGTCAAATTC GCTCCTCGCCACCATCACCCTAAACCCCCGCCCGATAATTACACCCTTGCCCTCCATAAGGCCCTCATGTTCTTCAACGCCCAGAAATCGGGGAAGCTTC CCAAGCATAACAACGTCTCATGGAGAGGGAACTCGTGTATGAACGATGGCAAAGGAGATTCGTCGACTCTGTTTAAGGATCTGGTTGGTGGATACTACGA TGCCGGAGATGCAATCAAGTTCAATTTCCCGTGA
AA sequence Show only first row Show all	>Lus10007585 pacid=23148115 polypeptide=Lus10007585 locus=Lus10007585.g ID=Lus10007585.BGIv1.0 annot-version=v1.0 MSMYGRDPWGGPLEINTADSATDDDRSRNLNDLDRAALSNSRPLDETQQSWLLGPTEQKKKKRYVDLGCIIVSRKIFIWTLGTLLAAGLLTGLIIIIVKF APRHHHPKPPPDNYTLALHKALMFFNAQKSGKLPKHNNVSWRGNSCMNDGKGDSSTLFKDLVGGYYDAGDAIKFNFP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Lus10007585 [exp]	0	1
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Lus10007584 [exp]	1.4	0.9675
AT1G19835			Plant protein of unknown funct...		Lus10012431 [exp]	3.5	0.9500
AT3G16630		ATKINESIN-13A, ...	P-loop containing nucleoside t...		Lus10002876 [exp]	5.3	0.9252
					Lus10043485 [exp]	6.3	0.9578
AT1G68200	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10035256 [exp]	7.5	0.9532
AT1G32770	NAC	NST3, ANAC012, ...	SECONDARY WALL-ASSOCIATED NAC ...		Lus10008271 [exp]	7.5	0.9449
AT5G46340		RWA1	REDUCED WALL ACETYLATION 1, O-...		Lus10037795 [exp]	8.5	0.9308
AT5G53340			Galactosyltransferase family p...		Lus10033935 [exp]	9.0	0.9439
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Lus10007497 [exp]	11.4	0.9494
AT1G79620			Leucine-rich repeat protein ki...		Lus10023849 [exp]	11.8	0.9398

Compare expression of checked genes

Lus10007585 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.