Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49740 787 / 0 ATFRO7, FRO7 ferric reduction oxidase 7 (.1) AT5G49730 770 / 0 ATFRO6, FRO6 ferric reduction oxidase 6 (.1) AT1G01590 340 / 2e-106 ATFRO1, FRO1 ferric reduction oxidase 1 (.1) AT1G01580 323 / 2e-99 FRD1, ATFRO2, FRO2 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) AT5G23980 310 / 8e-95 FRO2, ATFRO4, FRO4 ferric reduction oxidase 4 (.1) AT5G23990 293 / 6e-89 ATFRO5, FRO5 ferric reduction oxidase 5 (.1) AT1G23020 289 / 9e-87 ATFRO3, FRO3 ferric reduction oxidase 3 (.1.2) AT5G50160 266 / 4e-78 ATFRO8, FRO8 ferric reduction oxidase 8 (.1) AT1G19230 97 / 1e-20 Riboflavin synthase-like superfamily protein (.1.2) AT4G25090 92 / 9e-19 Riboflavin synthase-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012161 [exp] 1051 / 0 AT5G49740 723 / 0.0 ferric reduction oxidase 7 (.1) Lus10039268 [exp] 333 / 3e-103 AT1G01580 722 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Lus10036379 [exp] 301 / 2e-91 AT1G01580 691 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Lus10014957 [exp] 276 / 2e-82 AT5G23980 665 / 0.0 ferric reduction oxidase 4 (.1) Lus10036381 [exp] 271 / 7e-80 AT1G01580 701 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Lus10012160 [exp] 241 / 6e-75 AT5G49740 130 / 8e-35 ferric reduction oxidase 7 (.1) Lus10019488 [exp] 229 / 9e-65 AT5G50160 691 / 0.0 ferric reduction oxidase 8 (.1) Lus10029896 [exp] 95 / 8e-20 AT1G09090 1158 / 0.0 respiratory burst oxidase homolog B (.1.2) Lus10017527 [exp] 94 / 2e-19 AT1G64060 1445 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G079000 [exp] 837 / 0 AT5G49730 886 / 0.0 ferric reduction oxidase 6 (.1) Potri.014G088000 [exp] 318 / 7e-98 AT1G01580 762 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Potri.004G079100 [exp] 308 / 4e-94 AT1G01580 692 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Potri.017G142800 [exp] 308 / 4e-94 AT5G23980 894 / 0.0 ferric reduction oxidase 4 (.1) Potri.017G142700 [exp] 307 / 7e-94 AT1G01580 677 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Potri.004G079200 [exp] 306 / 1e-93 AT5G23980 870 / 0.0 ferric reduction oxidase 4 (.1) Potri.015G083200 [exp] 253 / 2e-73 AT5G50160 650 / 0.0 ferric reduction oxidase 8 (.1) Potri.012G084800 [exp] 237 / 1e-67 AT5G50160 657 / 0.0 ferric reduction oxidase 8 (.1) Potri.005G026200 [exp] 95 / 6e-20 AT1G09090 1165 / 0.0 respiratory burst oxidase homolog B (.1.2) Potri.003G133300 [exp] 94 / 1e-19 AT1G64060 1489 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0328 [flax] [poplar] 2heme_cytochrom PF01794 [flax] [poplar] Ferric_reduct Ferric reductase like transmembrane component CL0076 [flax] [poplar] FAD_Lum_binding PF08022 [flax] [poplar] FAD_binding_8 FAD-binding domain CL0091 [flax] [poplar] NAD_Ferredoxin PF08030 [flax] [poplar] NAD_binding_6 Ferric reductase NAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10007586 pacid=23148098 polypeptide=Lus10007586 locus=Lus10007586.g ID=Lus10007586.BGIv1.0 annot-version=v1.0 ATGGACCAGCGTCAAAAACTCAGAGATCCACTCCTCGCCGACGGAGATGATGATCGGAAGCCGCTCAGAGGCGCCGCCGGCGATCGGTTCAGGGGATTCG CCAAATGGGTTCTCGAGATGTTGATGTGGGCAATCTTCATTGTGTGGCTCACTCTCGTCTTCGTCTTCCCAACTGAGCTGGGCAACGATTTGGTCTTCAA GAAGTGGACTGCCCTCACCAAGACTCCTCTCTTCGGCATCACAGGGAGCTTGTTGTTGCTGCTGGCCGGACCGGTGCTGCTCATCGCACTCCTGGCCGCG GCCCATCTCATCATTTCCGGGGAAGGGGAGCATCACCTTTACCAGAAGAAGAGCTGGAAGTACCCGAGGCCCCAGCTATGGACATTCCCGGTGATCGTGG ATGGACCACTCGGGGTTGTATCGGCGACAGAGCTTATCGGAGTTGTGCTCTTCGTTGGCTACATTGTATGGGCTTTTTACCTCTACACCGTCCGGAACCT CGCTCTCTTGTCTTCCTACACCCTCACTCTCCCACAATTCAGTTTGTTTCTGATGGAGCTCACGGGGCTACGATTGGGAATGATCGGGATGTTCTGCTTG GCGTTTCTCTTCCTCCCGATCTCGAGAGGATCGATGCTCCTTCGACTCATCGACATCCCTGTAGAGCACGCAACGAGATACCATGTTTGGTTGGGACACA TAACCATGTTGTTGTTCACTCTCCATGGACTGTTCTATGTCGTCGCTTGGGCTGTTCAGGGAAAGCTCTTAGAGGAAATATTGGAGTGGAAGAACATTGG GATATCCAACCTGGCAGGGTTGATTTCCCTCGTGGCAGGTCTGTTGATGTGGGTGACATCACTAAACCCAGTCAGGAGATGGAACTTTGAGCTCTTCTTC TACACACATCAACTCTACATTGTCTTTGTTCTCTTCTTGGCCTTCCACGTCGGGGACTTCCTTTTCACCATCGCTGCCGGTGGGATCTTCCTCTTCATCC TCGATCGATTTCTCCGGTTCTGCCAGTCCAGGAAGACCGTTGATGTCGTCTCTGCCAAATGCTTCCCCTGTGGCACTGTTGAGCTGACCCTCTCCAAGCC CGCAAATCTAAGGTACAATGCTCTGAGTTTCATCTTCATACAAGTCAGGGAACTGTCCTTGCTGCAATGGCACCCTTTCAGTGTTTCATCCAGTCCTTTA GAAGGCAAGAATCACATATCAGTTCTCATCAAAGTCCTCGGGGAGTGGACTGACAAGCTCAAAGATACCATCAAGATCAATACCTCGACAGTCAACAACG ATCCTGCATCTCGAAAGATCACAGCTTCTGTCGAAGGTCCATACGGGCACGAGTCACCTTACCACTTGATGTATGAGCACCTTGTTCTAGTAGCAGGAGG CATAGGGATCTCACCCTTCATGGCAATCTTGAGTGATGTCTTCCACAGAGTCAATGATGGCAAACCCTGCCTACCAAGAGAAATCTTGGTAGTGTGGGCC GTCAAGAAGTCCGAAGAGATCGGACTTCTGTCAGCGATGAATCTCGACCGCATATGTTCAGATCTCTATGACAGGCTCAATTTGCGTATCCACATCTACG TTACTCGAGAGTCAGATCCTCCACTGGAAGAAGGTAAAGTGTCGACCGAGGCATCAGGGGTTTCGGCCACCAGGTGCCCCTTCCCGATAGGGAACGACAT GTCGGTCCTGGTTGGTACGGGCGATAATGTATGGTCCGGACTGTATATTTTGTCGTCGACGTTGGGTTTCATCCTTTCGCTCGCTATGACTGACGCGTAT TACATCAACCCATATGGGGTAACATCATGGTGGTACAAGGGGCTTCTCCTTGTGGCGTGCATGGTTGGAAGCGTGGTTGTTTTCGGCGGTGCGGTTGTTG CATTGTGGCATCTCTGGGGTAGAAAAGCTTCAACCTTGGAGCAAGATGATGAGGAAACAATGACCAAAGTTGATGAAGGTTTGCCCAATAGTACTCCTAA CGGGACAAGGATTGTTGAAGATTTGCTTGCTTCAAGTTCAACCTCCGTCAACTATGGTTCAAGACCAGACTTCAAAGAAATAATGCAAAGTATATCGAAG GACTGGGGGCATGTTGATGTTGGTGTGATGGTATGTGGACCTCCAACTCTTCAGTCGACCGTCGCCAAGGAAATTAGGGCACACAATTTCAGAAGGAGCT CTGGTGAAACTGTGTTCCATTTCAATAGCCACAGTTTTGATCTTTAA
AA sequence Show only first row Show all	>Lus10007586 pacid=23148098 polypeptide=Lus10007586 locus=Lus10007586.g ID=Lus10007586.BGIv1.0 annot-version=v1.0 MDQRQKLRDPLLADGDDDRKPLRGAAGDRFRGFAKWVLEMLMWAIFIVWLTLVFVFPTELGNDLVFKKWTALTKTPLFGITGSLLLLLAGPVLLIALLAA AHLIISGEGEHHLYQKKSWKYPRPQLWTFPVIVDGPLGVVSATELIGVVLFVGYIVWAFYLYTVRNLALLSSYTLTLPQFSLFLMELTGLRLGMIGMFCL AFLFLPISRGSMLLRLIDIPVEHATRYHVWLGHITMLLFTLHGLFYVVAWAVQGKLLEEILEWKNIGISNLAGLISLVAGLLMWVTSLNPVRRWNFELFF YTHQLYIVFVLFLAFHVGDFLFTIAAGGIFLFILDRFLRFCQSRKTVDVVSAKCFPCGTVELTLSKPANLRYNALSFIFIQVRELSLLQWHPFSVSSSPL EGKNHISVLIKVLGEWTDKLKDTIKINTSTVNNDPASRKITASVEGPYGHESPYHLMYEHLVLVAGGIGISPFMAILSDVFHRVNDGKPCLPREILVVWA VKKSEEIGLLSAMNLDRICSDLYDRLNLRIHIYVTRESDPPLEEGKVSTEASGVSATRCPFPIGNDMSVLVGTGDNVWSGLYILSSTLGFILSLAMTDAY YINPYGVTSWWYKGLLLVACMVGSVVVFGGAVVALWHLWGRKASTLEQDDEETMTKVDEGLPNSTPNGTRIVEDLLASSSTSVNYGSRPDFKEIMQSISK DWGHVDVGVMVCGPPTLQSTVAKEIRAHNFRRSSGETVFHFNSHSFDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49740		ATFRO7, FRO7	ferric reduction oxidase 7 (.1...		Lus10007586 [exp]	0	1
AT5G64840		ABCF5, ATGCN5	ATP-binding cassette F5, gener...		Lus10005798 [exp]	1.7	0.9403
AT2G41040			S-adenosyl-L-methionine-depend...		Lus10008815 [exp]	3.7	0.9289
AT5G24120		ATSIG5, SIG5, S...	SIGMA FACTOR 5, sigma factor E...		Lus10014934 [exp]	3.9	0.9237
AT3G22840		ELIP1	EARLY LIGHT-INDUCABLE PROTEIN,...		Lus10039378 [exp]	4.2	0.9076
AT2G24820		AtTic55, TIC55-...	translocon at the inner envelo...		Lus10042424 [exp]	4.5	0.9157
AT3G47570			Leucine-rich repeat protein ki...		Lus10040186 [exp]	5.5	0.8979
AT3G11340		UGT76B1	UDP-dependent glycosyltransfer...		Lus10040246 [exp]	6.2	0.8954
AT4G27030		FADA, FAD4	FATTY ACID DESATURASE 4, fatty...		Lus10037808 [exp]	8.8	0.9121
AT2G15020			unknown protein		Lus10026592 [exp]	8.9	0.9071
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Lus10039301 [exp]	9.4	0.9027

Compare expression of checked genes

Lus10007586 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.