Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49760 909 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G49770 830 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G79620 800 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G49780 726 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G06840 382 / 8e-118 Leucine-rich repeat protein kinase family protein (.1) AT5G49750 360 / 1e-114 Leucine-rich repeat (LRR) family protein (.1) AT3G53590 310 / 9e-93 Leucine-rich repeat protein kinase family protein (.1) AT5G37450 236 / 5e-65 Leucine-rich repeat protein kinase family protein (.1) AT5G01950 236 / 7e-65 Leucine-rich repeat protein kinase family protein (.1) AT3G04690 218 / 2e-59 ANX1 ANXUR1, Malectin/receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012159 [exp] 1603 / 0 AT5G49760 1058 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10021003 [exp] 364 / 3e-116 AT1G79620 549 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019114 [exp] 376 / 2e-115 AT1G06840 1288 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10034445 [exp] 367 / 6e-112 AT1G06840 1274 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10023849 [exp] 355 / 6e-112 AT1G79620 751 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035605 [exp] 358 / 2e-108 AT5G01950 1126 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10003244 [exp] 321 / 4e-95 AT5G01950 1039 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10023848 [exp] 290 / 2e-89 AT1G79620 431 / 5e-143 Leucine-rich repeat protein kinase family protein (.1) Lus10004061 [exp] 298 / 7e-87 AT5G01950 766 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G231700 [exp] 1085 / 0 AT5G49760 1031 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G232400 [exp] 1070 / 0 AT5G49760 1013 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231850 [exp] 931 / 0 AT5G49760 914 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G046450 [exp] 890 / 0 AT5G49760 865 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G232500 [exp] 874 / 0 AT5G49760 873 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231500 [exp] 845 / 0 AT5G49760 800 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231600 [exp] 823 / 0 AT5G49760 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G144100 [exp] 811 / 0 AT1G79620 1380 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231200 [exp] 789 / 0 AT5G49760 759 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G114400 [exp] 781 / 0 AT1G79620 1295 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10007587 pacid=23148097 polypeptide=Lus10007587 locus=Lus10007587.g ID=Lus10007587.BGIv1.0 annot-version=v1.0 ATGGGTAGTATTACTACTACTTCTTCTTGTGTCAGAGCTCTGGAGCTTCTTCTTCTGGTTCAGCTGGGTGCCTTTTTGTTCTTCACCGCCGGTGAGGCGG CCACCAACGGCGGCGACTTGAGTGTTCTGAATTCACTGAAAGACGTCTGGGGAAACACTCCACCCAATTGGGTAGGTGGAGATCCTTGTGGTGACAATTG GGAAGGCATTAGCTGTACCGGTACCAGAGTCACCTCCATAATATTGTCAAGCACCGGATTATCCGGTCAACTATCGGGAGACATATCATCCTTATCAGAG TTGACCATCTTGGACCTTTCATACAACAAAGGCTTAAGAGGGTCTCTCCCACAGTCCATTGGTAACTTGAAGAAGCTAGTCAATCTGATTCTGGTTGGCT GTAGCTTCACCGGTCCGATTCCCGATTCGATAGGATCACTTTCCAGGCTTACTTACTTATCACTGAACTCGAATGGCTTCACTGGAACGATTCCGGCCTC GATTGGAAACCTCATCAACCTGTACTGGCTTGACCTGGCCGATAACCAGCTCGAAGGCAGAATCCCGGTCTCGGATGGGGACACACCTGGTCTTGATCTC TTGGTGAACACAAAGCATTTTCATCTTGGGAAGAATCAGCTCACGGGGATAATCCCTACCAAGCTCTTCAACTCCAGCATGACTCTCATCCATGTGCTAT TTGATAGCAACAAGCTGACAGGCCCCATTCCTCCTTCACTCTCCCGTGTGGCGACCTTGGAAGTCTTGCGGTTGGACAGAAACGCGCTGACTGGATCTGT CCCTGAAGGATTCAACAATCTTGTAAGCATTGGCGAACTGAGTTTATCCAACAATAACCTGAATGGTACATTCCCAACCCTGACAGAAATGCAAGTTCTC AGCACTCTGGATCTGAGCAACAACAGCTTCAACTCGACGGGCTTCCCTTCATGGATATCGTCGATGACTTCGTTAACAACACTTGTACTGGAGAACACAC AGATCGGAGGACCGGTTCCGAGCAATCTGTTCAGCCTTTCGAATTTGCAGACAGTGAACATGAAGAGGAATGATTTGAATGGCAGTTTGGATATTGGATC ATCCTACAGTAGTCAGCTTGGAATGGTTGATTTGCAATCCAACTTCATTTCTGGCTACAGGCAGCGGCCTGGATCAAACGAGATCAATATCGAGTTGCTT CGCAACCCGGTTTGCGACGAAATTGGAACCGGACCAACCCCGCCATACTGCACCATTTCGGCTCCGGACTCCCGATACACAACACCGCCGAACAACTGCA TTCCGGGGGATTGTCCTTCGAACAAGACCGCCAGCCCAAACTGCCTCTGCGCATTTCCGTACACCGGTCTCTTTGTCCTCAGGTCGCCTTCCTTCTCCGA CTTGGGGAACGGAACCATCTACACTATGCTTCAAAAATCGCTCATGGACAGCTTCAGGGCGAACCAGCTAGCCGTCGACTCCGTCCAGCTAAGCAACCCT AGGAAGGACACGTCGGATTATCTCGACATCGACCTGAAAGTGTTCCCCAACGGTCAGGATTACTTCAATCGGACAGGGATTTCGAGGATCGCGTTTGTGT TGAGTAATCAGACGTTTAAACCGCCCAAGATGTTCGGGCCGTTTGTCTTCATCGGTGATGAGTACAGGGCTTTTGACGGGGGGATATCGGGGTCGAAGAA ATCGACAAGCACCGGGATCATAGTCGGAGCTGCCGTAGGTGGAGCGGTGCTATTGCTGCTGGTGCTCCTCGCCGGAATTTATGCTTACCGGCAGAAGAAG AGAGCGGAGAAAGCAACTGAGCAGAGCCACAATCCTTTCGCTCACTGGGACGCAACTCAGACCACCGGCGGCTTCCCGCAGCTGAAAGGAGCTCGATGCT TCTCCTTCGACGAGCTCAAGAAATACACCAACAATTTCTCGGACGCCAATGGCATCGGCTCCGGCGGCTACGGCAAGGTATACAGAGGGGTACTTCCGGC GGGGCAGCTAATAGCTATAAAACGAGCGCAGAGGGAATCGATGCAAGGAGGGGTGGAATTCAAGACGGAGATTGAATTACTGTCTAGGGTTCATCACAAG AACGTGGTGAGCTTGGTAGGGTTCTGCTTCGAGCAAGGCGAACAGATGCTTATTTACGAGTATGTCCCCAATGGCACCCTCAGCGACAGCCTCTCAGGAA AGTCAGGGATCACGATGGATTGGACAAGGAGGCTAAAAGTGGCACTTGGAGCAGCAAGAGGACTAGCGTATCTCCATGAGCTAGCAGATCCACCGATCAT CCATAGAGACATCAAGACCGCCAATATCTTATTAGACGAGCGATTAACTGCTAAAGTTGCAGACTTTGGCTTGTCCAAGCTGATGGGCGACGAAGAAAAG GGCCATGTCACCACTCAAGTCAAAGGAACCATGTTAACGGAGAAAAGCATGTACAACCTCCAAACCTTGATCGACCCGGAGATCACCGCAGAGTCATTGA AAGGAATCGACAAGTTCGTCGACCTCGCGATGTCGTGCGTGCACGAATCGGGAGCAGAACGGCCTACGATGGGGGAAGTCGTTAAGGAGATTGAGCTAAT CTTGCAGCAAGCCGGTTTGAACCCCAACGGTGATTCGGTCAACATCTCGGGCGCGTACGAGGATGCAGGGAAAGGAAGCCCTCACCATCCTTACAGCAAA GAGGCTTTTGAGTACAGTGGAGCTTTCCCTCCTTCCAAGGTTGAGCCCCTTTAA
AA sequence Show only first row Show all	>Lus10007587 pacid=23148097 polypeptide=Lus10007587 locus=Lus10007587.g ID=Lus10007587.BGIv1.0 annot-version=v1.0 MGSITTTSSCVRALELLLLVQLGAFLFFTAGEAATNGGDLSVLNSLKDVWGNTPPNWVGGDPCGDNWEGISCTGTRVTSIILSSTGLSGQLSGDISSLSE LTILDLSYNKGLRGSLPQSIGNLKKLVNLILVGCSFTGPIPDSIGSLSRLTYLSLNSNGFTGTIPASIGNLINLYWLDLADNQLEGRIPVSDGDTPGLDL LVNTKHFHLGKNQLTGIIPTKLFNSSMTLIHVLFDSNKLTGPIPPSLSRVATLEVLRLDRNALTGSVPEGFNNLVSIGELSLSNNNLNGTFPTLTEMQVL STLDLSNNSFNSTGFPSWISSMTSLTTLVLENTQIGGPVPSNLFSLSNLQTVNMKRNDLNGSLDIGSSYSSQLGMVDLQSNFISGYRQRPGSNEINIELL RNPVCDEIGTGPTPPYCTISAPDSRYTTPPNNCIPGDCPSNKTASPNCLCAFPYTGLFVLRSPSFSDLGNGTIYTMLQKSLMDSFRANQLAVDSVQLSNP RKDTSDYLDIDLKVFPNGQDYFNRTGISRIAFVLSNQTFKPPKMFGPFVFIGDEYRAFDGGISGSKKSTSTGIIVGAAVGGAVLLLLVLLAGIYAYRQKK RAEKATEQSHNPFAHWDATQTTGGFPQLKGARCFSFDELKKYTNNFSDANGIGSGGYGKVYRGVLPAGQLIAIKRAQRESMQGGVEFKTEIELLSRVHHK NVVSLVGFCFEQGEQMLIYEYVPNGTLSDSLSGKSGITMDWTRRLKVALGAARGLAYLHELADPPIIHRDIKTANILLDERLTAKVADFGLSKLMGDEEK GHVTTQVKGTMLTEKSMYNLQTLIDPEITAESLKGIDKFVDLAMSCVHESGAERPTMGEVVKEIELILQQAGLNPNGDSVNISGAYEDAGKGSPHHPYSK EAFEYSGAFPPSKVEPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49760			Leucine-rich repeat protein ki...		Lus10007587 [exp]	0	1
AT5G25220	HD	KNAT3	KNOTTED1-like homeobox gene 3 ...		Lus10003183 [exp]	1.0	0.9572
AT5G24530		DMR6	DOWNY MILDEW RESISTANT 6, 2-ox...		Lus10000711 [exp]	2.8	0.9417
AT1G74790			catalytics (.1)		Lus10033116 [exp]	3.9	0.9483
AT1G34320			Protein of unknown function (D...		Lus10018317 [exp]	4.5	0.9383
AT3G10915			Reticulon family protein (.1.2...		Lus10034224 [exp]	4.5	0.9485
AT2G48030			DNAse I-like superfamily prote...		Lus10042675 [exp]	4.6	0.9223
AT1G74790			catalytics (.1)		Lus10036662 [exp]	5.3	0.9285
AT3G12160		AtRABA4d	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10023829 [exp]	6.0	0.9249
AT3G21690			MATE efflux family protein (.1...		Lus10001142 [exp]	6.8	0.9100
AT3G10150		ATPAP16, PAP16	purple acid phosphatase 16 (.1...		Lus10018030 [exp]	8.0	0.9257

Compare expression of checked genes

Lus10007587 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.