Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40830 229 / 8e-71 ATRAD3, ATATR S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G27230 224 / 9e-69 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G01240 222 / 1e-65 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G05390 217 / 2e-65 unknown protein AT1G29790 206 / 2e-62 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G00750 50 / 2e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G33170 50 / 3e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G13860 49 / 5e-06 QUL1 QUASIMODO2 LIKE 1 (.1.2.3.4) AT4G10440 49 / 6e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G43200 48 / 8e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012157 [exp] 465 / 5e-164 AT4G01240 155 / 2e-42 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10020803 [exp] 344 / 2e-115 AT5G40830 282 / 1e-91 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10007385 [exp] 337 / 6e-113 AT5G40830 277 / 1e-89 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10012158 [exp] 263 / 7e-88 AT5G40830 120 / 8e-33 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10024318 [exp] 221 / 1e-67 AT3G27230 581 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10015264 [exp] 218 / 7e-67 AT1G29790 504 / 1e-179 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10010138 [exp] 216 / 4e-65 AT4G01240 620 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10034506 [exp] 214 / 6e-65 AT3G27230 599 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10025384 [exp] 210 / 1e-63 AT1G29790 501 / 3e-178 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G231100 [exp] 489 / 1e-171 AT3G05390 287 / 2e-92 unknown protein Potri.017G135100 [exp] 353 / 6e-119 AT3G05390 278 / 3e-89 unknown protein Potri.004G083800 [exp] 348 / 1e-116 AT3G05390 278 / 3e-89 unknown protein Potri.005G236600 [exp] 245 / 9e-77 AT3G27230 634 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G024800 [exp] 245 / 1e-76 AT3G27230 600 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G352700 [exp] 218 / 6e-67 AT1G29790 437 / 2e-153 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.002G165300 [exp] 220 / 1e-66 AT4G01240 662 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.011G079000 [exp] 211 / 2e-64 AT1G29790 439 / 2e-154 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.013G019400 [exp] 211 / 3e-63 AT3G05390 753 / 0.0 unknown protein Potri.004G232200 [exp] 199 / 3e-63 AT3G05390 94 / 8e-24 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03141 [flax] [poplar] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10007588 pacid=23148120 polypeptide=Lus10007588 locus=Lus10007588.g ID=Lus10007588.BGIv1.0 annot-version=v1.0 ATGGGAATTGGAGCAAGCGAAGATCACCGCCACTACCACAAGAAGGCTAACAGCAACAATGGCGGTGGCAGCAAGTTCAGCATCAAGACCAACAACAATG GCGGTGGCAGCAAGTTCAGCATCAAGACAGTGCTTCTAGTCATCTTAACAAACCTCTTCACCATCTACATCTTCACCGGCTTCAACCTCGACGCCGCCAC TCGCCTCCAGTTCACCACCACCCACTTCTTCCCCATCTCCACCGCAGCCTGGAACTCCTCCGAGCTCCACTCCACGAGGCGCCAGCTCGAGGAGTCAAAT TCAGCCGCCCTCCACCGCCGGCTCAACTCGACCAACCTCCTCCTCCAGTCCCTCTTGATAGAGCTCACTAGCAGGAGTACTGCCGGTGAGCAACAACCGC CTGCAATGGTGGAGCCCACCACTGCTAAGCAGTTGATCACAAATTTGTTTGAAACTGGCAACGAGGAAGTCAAGCTCGCGATAGGGGCGCATAAATTGCC GTTGGGGTTCGCACCCAGGTCCGGTTCCGATGAGATCGACTTGCCCGTCGGAGCCAGATGCCTGAACCACCCCAAGGTGTTGGCGCAGTACATGACGTAC GATGTCGGAGGGACATGTCCCCTTGACGACATGTTCGCCCAGAGGCTGATGCTCAAAGGGTGCGAGCCCCTCCCTCGCAGGAGCTACAAGTGTCTAGTGA ACCGCAATAAGGCGCCCGGTTTCTACGACTGCAAGGACTGTTTCGACCTCCGAGGCAGGGAGAGCTCGCGGTGGATGGTCGACAGAGGCGGGCTCGATTT CAGGATCGACGAGGTCCTCAAGACGAAACAGGCAGGAACCATCCGGATAGGGATGGATATCGGGGGCGGGAGCGGGACATTCGCGGCGCGAATGGCCGAG CGGAACATCACCATCATTACAAGCACCATGAACCTCGACGGACCCTTCAACAGCTTCATTGCCTCCAGGGGACTGATTCCGATCCATTACACCGTCTCGC AGAGGCTTCCTTTCTTCGAGAACACGCTCGACATCGTCCATTCTATGCATATACTGAGCAACTGGATCCCTGACACGATGCTTGAGTTCACTCTGTACGA CGTGTATAGAGTGTTGAGGCCCGGTGGGTTGTTCTGGCTCGACCATTTCTTCTGCCTTGGGAATCAGCTCAACGGAACATATATACCGATGCTTGATCGG GTTGGGTTCAAGAAGCTCCGGTGGCATGCTGGGATGAAGCTCGACCGTGGCGTCGGGTTCAACGAGTGGTACTTCTCAGCTCTGCTCGAGAAACCCATGA CTTGA
AA sequence Show only first row Show all	>Lus10007588 pacid=23148120 polypeptide=Lus10007588 locus=Lus10007588.g ID=Lus10007588.BGIv1.0 annot-version=v1.0 MGIGASEDHRHYHKKANSNNGGGSKFSIKTNNNGGGSKFSIKTVLLVILTNLFTIYIFTGFNLDAATRLQFTTTHFFPISTAAWNSSELHSTRRQLEESN SAALHRRLNSTNLLLQSLLIELTSRSTAGEQQPPAMVEPTTAKQLITNLFETGNEEVKLAIGAHKLPLGFAPRSGSDEIDLPVGARCLNHPKVLAQYMTY DVGGTCPLDDMFAQRLMLKGCEPLPRRSYKCLVNRNKAPGFYDCKDCFDLRGRESSRWMVDRGGLDFRIDEVLKTKQAGTIRIGMDIGGGSGTFAARMAE RNITIITSTMNLDGPFNSFIASRGLIPIHYTVSQRLPFFENTLDIVHSMHILSNWIPDTMLEFTLYDVYRVLRPGGLFWLDHFFCLGNQLNGTYIPMLDR VGFKKLRWHAGMKLDRGVGFNEWYFSALLEKPMT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40830		ATRAD3, ATATR	S-adenosyl-L-methionine-depend...		Lus10007588 [exp]	0	1
AT2G17080			Arabidopsis protein of unknown...		Lus10023962 [exp]	2.0	0.8327
AT5G62280			Protein of unknown function (D...		Lus10031122 [exp]	3.5	0.8318
AT2G24400			SAUR-like auxin-responsive pro...		Lus10026977 [exp]	4.0	0.8002
AT3G52440	DOF	AtDof3,5	Dof-type zinc finger DNA-bindi...		Lus10029767 [exp]	6.2	0.8009
AT5G04420			Galactose oxidase/kelch repeat...		Lus10037933 [exp]	7.3	0.7320
AT1G57610			Protein of unknown function (D...		Lus10019127 [exp]	7.4	0.7729
AT5G52280			Myosin heavy chain-related pro...		Lus10029303 [exp]	7.7	0.7915
AT5G21050			unknown protein		Lus10019547 [exp]	9.5	0.7699
AT1G08070		EMB3102, OTP82	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10001168 [exp]	11.4	0.7204
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10035970 [exp]	14.5	0.7736

Compare expression of checked genes

Lus10007588 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.