Plant FIBer expression Database

Lus10007591 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G31817 166 / 1e-51 NFD3 NUCLEAR FUSION DEFECTIVE 3, Ribosomal L18p/L5e family protein (.1)
ATCG00750 54 / 5e-10 ATCG00750.1, RPS11 ribosomal protein S11 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012155
[exp]
275 / 4e-96 AT1G31817 168 / 2e-51 NUCLEAR FUSION DEFECTIVE 3, Ribosomal L18p/L5e family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G117700
[exp]
160 / 6e-49 AT1G31817 154 / 2e-44 NUCLEAR FUSION DEFECTIVE 3, Ribosomal L18p/L5e family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0267 S11_L18p PF00411 Ribosomal_S11 Ribosomal protein S11
Representative CDS sequence
>Lus10007591 pacid=23148123 polypeptide=Lus10007591 locus=Lus10007591.g ID=Lus10007591.BGIv1.0 annot-version=v1.0
ATGGACTTAGTGAGGAAAATCATAGATGAAAATGCTCAATTCACTAAGCCCACCACCGAGGGAAACGAAGAGGTTGTCCACATACAGCTGCTGCGAAACA
ACACCTTCGTCACAGTCACAGACCAGAAAGGGAACGCCAAGGTTGGAGGGCTCGAGGCTTCGTCAGGGATGGTGCCCGAGCTCAAAGGAGGGCCTAAGCT
CTCTCGTTACGTTGCTGAGGCAACTTCGGAGCATGTTGGGAGGAAGTCCAGAGAAATGGGGCTTAGATCGGTCGTGATTAAGGTCAACGGGTTTACCTTC
TTCAAGAAGAAGAGGCAAGCAATCATGAGCTTCAAAGAAGGGTTCGGCCACAATATCGCTGCCATCGAGGACACAACGCGCAAGCCACATAATGGTTGCA
GACTGCCGAAGAAGCGCAGGATCTAG
AA sequence
>Lus10007591 pacid=23148123 polypeptide=Lus10007591 locus=Lus10007591.g ID=Lus10007591.BGIv1.0 annot-version=v1.0
MDLVRKIIDENAQFTKPTTEGNEEVVHIQLLRNNTFVTVTDQKGNAKVGGLEASSGMVPELKGGPKLSRYVAEATSEHVGRKSREMGLRSVVIKVNGFTF
FKKKRQAIMSFKEGFGHNIAAIEDTTRKPHNGCRLPKKRRI

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G31817 NFD3 NUCLEAR FUSION DEFECTIVE 3, Ri... Lus10007591
[exp]
0 1
AT5G64140 RPS28 ribosomal protein S28 (.1) Lus10013543
[exp]
2.4 0.8203
AT3G18110 EMB1270 embryo defective 1270, Pentatr... Lus10013785
[exp]
4.0 0.7837
AT5G09510 Ribosomal protein S19 family p... Lus10041168
[exp]
6.7 0.8153
AT5G46850 unknown protein Lus10040093
[exp]
9.1 0.7277
AT2G36930 C2H2ZnF zinc finger (C2H2 type) family... Lus10014426
[exp]
9.9 0.7858
AT2G45640 ATSAP18, HDA19 SIN3 ASSOCIATED POLYPEPTIDE 18... Lus10041388
[exp]
13.0 0.8043
AT1G04480 Ribosomal protein L14p/L23e fa... Lus10022881
[exp]
14.2 0.8462
AT1G63270 ABCI1, ATNAP10 ATP-binding cassette I1, non-i... Lus10022692
[exp]
22.0 0.8106
AT1G57540 unknown protein Lus10035345
[exp]
22.0 0.8082
AT3G08000 RNA-binding (RRM/RBD/RNP motif... Lus10031534
[exp]
28.9 0.7794

Lus10007591 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.