Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48670 52 / 3e-08 MADS FEM111, AGL80 AGAMOUS-like 80 (.1) AT5G06500 49 / 5e-07 MADS AGL96 AGAMOUS-like 96 (.1) AT2G40210 46 / 6e-06 MADS AGL48 AGAMOUS-like 48 (.1) AT1G65330 44 / 3e-05 MADS AGL37, PHE1 PHERES1, AGAMOUS-like 37, MADS-box transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012154 [exp] 272 / 4e-94 AT5G06500 65 / 7e-13 AGAMOUS-like 96 (.1) Lus10021399 [exp] 71 / 2e-15 AT5G48670 84 / 1e-19 AGAMOUS-like 80 (.1) Lus10004150 [exp] 72 / 3e-15 AT1G65330 84 / 8e-19 PHERES1, AGAMOUS-like 37, MADS-box transcription factor family protein (.1) Lus10016180 [exp] 67 / 1e-13 AT5G26650 84 / 5e-19 AGAMOUS-like 36 (.1) Lus10029367 [exp] 67 / 3e-13 AT5G06500 88 / 1e-20 AGAMOUS-like 96 (.1) Lus10022325 [exp] 54 / 6e-09 AT1G65300 113 / 1e-30 PHERES2, AGAMOUS-like 38 (.1) Lus10022316 [exp] 46 / 4e-06 AT5G48670 131 / 2e-36 AGAMOUS-like 80 (.1) Lus10014883 [exp] 44 / 3e-05 AT5G48670 114 / 1e-29 AGAMOUS-like 80 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G068132 [exp] 78 / 1e-17 AT5G48670 125 / 1e-34 AGAMOUS-like 80 (.1) Potri.006G201700 [exp] 74 / 2e-15 AT5G48670 120 / 2e-30 AGAMOUS-like 80 (.1) Potri.005G002400 [exp] 61 / 4e-11 AT5G48670 222 / 4e-71 AGAMOUS-like 80 (.1) Potri.013G001700 [exp] 56 / 2e-09 AT5G48670 203 / 3e-64 AGAMOUS-like 80 (.1) Potri.013G018100 [exp] 52 / 2e-08 AT5G48670 187 / 1e-58 AGAMOUS-like 80 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007592 pacid=23148121 polypeptide=Lus10007592 locus=Lus10007592.g ID=Lus10007592.BGIv1.0 annot-version=v1.0 ATGGGAAGGAAGGCGAAGTTGGCACGGATCCAAAGCGAAGCCAAGCGAGCCGCCACCATGAAGAGGCTAACCGAAGAGCTAGTGAAGGAAACTGAGGAGC TGTCTACCATTTGCGGGGTAGACGCTTTCGTGGTGACCTACAACAGTCCGAATGATGCTGAACCCTCAGCGGTCTGGCCCCCGGATCCGACCAAGGTGAT GGAGAGGTATATGGCGATGCCTGTAGCGGAGCGTACTGCGAACACCTCAGGCCCCGAGAGCGATCTGATCAAGAAAATTAAAAAGACCGAGCGAGAACTG GCCGAGCAGATTGCCCGGAACAAGGAGATCGAGTTTGATATGCTGATGAAAGAGGTACACTATGGGAAGGGGCTGCATAATTTCGACCCCAACGAAGTGG CGTTGCTCGAGCAGCACCTGAATGAGCGAATTGAGAGGCTTCAGCATCTCAAGCTCAAGGGAGTGCAGGAAGGAGCTGGAGAGGGCATTAACGATGCCGC TACAGGGTCAGGCAGCGGGGAGCTTGGCAATGGAGGATCCACCGACAGCGGTGAGCCAAAATCGGAGCAGATTGATGACTAA
AA sequence Show only first row Show all	>Lus10007592 pacid=23148121 polypeptide=Lus10007592 locus=Lus10007592.g ID=Lus10007592.BGIv1.0 annot-version=v1.0 MGRKAKLARIQSEAKRAATMKRLTEELVKETEELSTICGVDAFVVTYNSPNDAEPSAVWPPDPTKVMERYMAMPVAERTANTSGPESDLIKKIKKTEREL AEQIARNKEIEFDMLMKEVHYGKGLHNFDPNEVALLEQHLNERIERLQHLKLKGVQEGAGEGINDAATGSGSGELGNGGSTDSGEPKSEQIDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26650	MADS	AGL36	AGAMOUS-like 36 (.1)		Lus10007592 [exp]	0	1
AT2G02130		PDF2.3, LCR68	low-molecular-weight cysteine-...		Lus10029544 [exp]	1.4	0.8903
AT4G15620			Uncharacterised protein family...		Lus10012562 [exp]	4.2	0.8659
					Lus10041373 [exp]	4.6	0.8350
AT2G46410	MYB	CPC	CAPRICE, Homeodomain-like supe...		Lus10014933 [exp]	7.5	0.7671
					Lus10022997 [exp]	7.7	0.7859
AT2G25180	GARP	ARR12	response regulator 12 (.1)		Lus10036303 [exp]	14.8	0.7576
AT5G55590		QRT1	QUARTET 1, Pectin lyase-like s...		Lus10016605 [exp]	17.2	0.7791
AT1G76140			Prolyl oligopeptidase family p...		Lus10021835 [exp]	21.0	0.7271
AT3G45740			hydrolase family protein / HAD...		Lus10008416 [exp]	22.2	0.7410
AT1G23000			Heavy metal transport/detoxifi...		Lus10028529 [exp]	25.0	0.7679

Compare expression of checked genes

Lus10007592 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.