Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09570 1849 / 0 FHY2, HY8, FRE1, PHYA ELONGATED HYPOCOTYL 8, FAR RED ELONGATED 1, FAR RED ELONGATED HYPOCOTYL 2, phytochrome A (.1.2) AT2G18790 1179 / 0 OOP1, HY3, PHYB OUT OF PHASE 1, phytochrome B (.1) AT4G16250 1156 / 0 PHYD phytochrome D (.1) AT5G35840 1150 / 0 PHYC phytochrome C (.1) AT4G18130 1006 / 0 PHYE phytochrome E (.1) AT5G10720 62 / 3e-09 CKI2, AHK5 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012151 [exp] 2285 / 0 AT1G09570 1855 / 0.0 ELONGATED HYPOCOTYL 8, FAR RED ELONGATED 1, FAR RED ELONGATED HYPOCOTYL 2, phytochrome A (.1.2) Lus10037771 [exp] 1209 / 0 AT2G18790 1848 / 0.0 OUT OF PHASE 1, phytochrome B (.1) Lus10016911 [exp] 1206 / 0 AT2G18790 1836 / 0.0 OUT OF PHASE 1, phytochrome B (.1) Lus10006389 [exp] 1172 / 0 AT5G35840 1426 / 0.0 phytochrome C (.1) Lus10012342 [exp] 1109 / 0 AT5G35840 1363 / 0.0 phytochrome C (.1) Lus10011967 [exp] 1044 / 0 AT4G18130 1444 / 0.0 phytochrome E (.1) Lus10004593 [exp] 374 / 7e-119 AT4G18130 462 / 2e-153 phytochrome E (.1) Lus10006388 [exp] 373 / 3e-118 AT5G35840 493 / 8e-165 phytochrome C (.1) Lus10004592 [exp] 215 / 1e-61 AT4G18130 321 / 1e-100 phytochrome E (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G000300 [exp] 1870 / 0 AT1G09570 1806 / 0.0 ELONGATED HYPOCOTYL 8, FAR RED ELONGATED 1, FAR RED ELONGATED HYPOCOTYL 2, phytochrome A (.1.2) Potri.008G105200 [exp] 1207 / 0 AT2G18790 1840 / 0.0 OUT OF PHASE 1, phytochrome B (.1) Potri.010G145900 [exp] 1194 / 0 AT2G18790 1820 / 0.0 OUT OF PHASE 1, phytochrome B (.1) Potri.018G011400 [exp] 56 / 2e-07 AT5G10720 707 / 0.0 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) Potri.006G270500 [exp] 56 / 2e-07 AT5G10720 725 / 0.0 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) Potri.002G201500 [exp] 53 / 1e-06 AT2G40940 897 / 0.0 ethylene response sensor 1 (.1) Potri.013G009700 [exp] 47 / 8e-05 AT2G47430 572 / 0.0 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0161 [flax] [poplar] GAF PF01590 [flax] [poplar] GAF GAF domain CL0025 [flax] [poplar] His_Kinase_A PF00512 [flax] [poplar] HisKA His Kinase A (phospho-acceptor) domain CL0183 [flax] [poplar] PAS_Fold PF08446 [flax] [poplar] PAS_2 PAS fold CL0025 [flax] [poplar] His_Kinase_A PF02518 [flax] [poplar] HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CL0183 [flax] [poplar] PAS_Fold PF00989 [flax] [poplar] PAS PAS fold CL0161 [flax] [poplar] GAF PF00360 [flax] [poplar] PHY Phytochrome region
Representative CDS sequence Show only first row Show all	>Lus10007594 pacid=23148122 polypeptide=Lus10007594 locus=Lus10007594.g ID=Lus10007594.BGIv1.0 annot-version=v1.0 ATGTCTACTTCAAGGCCGACCCAATCGTCGAATTCGCGCCGGAGCGACAGAGTGATCGCTCAAACAACAGTAGACGCGAAGCTCCACGCCGACTTCGAAG AATCCGGTAGCTCATTCGACTACACCAGCTCAATCCGAGTCACAAGCTCCTCTTCCTCACTCCCGCCACCACAACAACAGAATCAGGTCAGACCCAAGTC AGACAAGCTCACCACAGCTTACCTCCACCACATCCAGAAAGGCAAGCTGATCCAGCCCTTCGGCTGCTTACTAGCCCTCGACGACAAGACTTACAGAGTC ATCGCCTACAGCGAGAACGCCCCCGAAATGTTGACCATGGTCAACCACGCAGTCCCGACCGTCGGCGAGATTCCCACTCTAGGAATCGGCACCGATTTGA GAACGATCTTCACTCCCCCGAGTGCCAACGCTTTGATCAAGGCGCTAGGGTTTGGCGACATTGCGCTTCTGAATCCAATTCTCGTCCACTGTAAAACCTC TGGAAAACCGTTCTATGCAATCGTTCATAGGGTTACGGGAAGCTTCATTGTTGATTTCGAGCCGGTCAAGCCTTACGAGGTAGCTGCGACGACGAAGGGG GCGTTGCAGTCGTACATGCTGGCGGCGAAAGCGATCACGAGGCTGCAAGGTTTGCCGAGTGGGAGTATGGAGAGGCTGTGTGACACCATGGTTCAGGAAG TGTTTGAGCTTAGCGGCTATGATAGAGTGATGGCTTACAAGTTTCACGACGACGATCATGGCGAAGTTGTCTCTGAGATTACGAAGCCTGGATTAGAGCC TTATTTGGGACTGCATTATCCTGCTACTGACATCCCTCAAGCTGCGAGGTTTTTGTTCATGAAGAACAAAGTTAGGATGATTGTTGACTGTAGAGTTAAG CATGTCAAAGTGCTTCAAGACGATGGGCTCGATTTCGAGCTGACTTTATGTGGTTCGACTCTGAGAGCTCCACATAGCTGCCATTTGCAGTACATGGAGA ACATGGACTCGATCGCTTCGTTGGTTATGGCCGTGATCGTTAACGAAGAAGGCGACGATAATAATGGTGATGGCCAGGAGTTGCAGCAGAAGAGGAAGAG GCTATGGGGGTTGGTCGTGTGTCATAATACTACCCCGAGGTTCGTTCCTTTCCCGGTTCGTTCCGCTTGTGAGTTTCTAGCTCAGGTCTTTGCTATCCAT GTGAACAAAGAGATAGAGCTTGAGAATCAGATTGTGGAGAAGAATATCCTCCGTACTCAGACGTTATTATGCGACATGTTGATGCGAGATGCGCCTTTAG GGATCGTGACTCAGTCTCCGAATGTAATGGACCTTGTCAAATGTGATGGTGCTGCATTGTTGTACAAGAACAAAGTATGGAGGCTCGGTGCGACTCCCTC CGATTTCCAAATCCAGGACGTTGCTCGGTGGTTATCCGAGTATCATATGGATTCGACCGGTTTGAGTACTGATAGCTTGTACGATGCAGGCTATCCTGGT GCGTTAGCTCTCGGGGATGTAGTCTGTGGGATGGCAGCTGTGAGGATAAGCTCTCATGATTTACTGTTCTGGTTTCGCGCACAGACTGCTTCGGAAGTTC GATGGGGTGGTGCGAAGCATGAGCATGGGGAAGAGGATGATGGGAGGAAGATGCATCCGAGATCGTCATTTAAAGCGTTTCTCGAGGTTGTCAAGACGAG GAGCTTGCCTTGGAAGGACTATGAGATGGATGCTATACATTCTCTGCAGCTTATACTGAGGAATGCGTTTAAGGATGGGGAGGGGGCCGTGGATGTGGAT GCGAAGATGATCCACACGAGGCTTAGTGATCTTAAGATCGATGGGATGCAGGAGCTCGAAGCTGTGACGGGTGAGATGGTGCGTTTGATCGAAACAGCTA CTGTGCCAATCTTGGCTGTTGATGTAGACGGTCTTGTTAATGGGTGGAACTCCAAGATTGCTGAGTTGACTGGTCTTTCGATTGATGAAGCTATAGGGAA GGAATTGTTGACGCTTGTGGAAGAGTCTTCTGTCCAGACTGTTCAGCAGATGCTGGCCTTTGCCCTGGAAGGCAAAGAGGAGCAAAACGTCCAATTCGAG ATAAAGACTCACGGTACTAAGAGCAACCATGGCCCAATCAGCTTGGTAGTAAACGCCTGTGCGAGTCGAGACCTTCAAGAGAGCGTAGTAGGTGTCTGCT TTGTGGCTCAAGACATCACGGGGCATAAGATCGTGATGGACAAGTTCACCCGGATAGAAGGCGACTACAAATCCATCGTGCAGAACCCGAACCCGTTGAT CCCTCCCATTTTCGGGGCAGATGAGTTCGGGTGGTGCTCGGAGTGGAACACAGCCATGACCACCTTAACCGGCTGGAACCGAGAAGCAGTGGTCGACAAA ATGCTTCTCGGAGAGGTGTTCGGGACAAACACCTCAAGCTCTTGTCGCTTGAAGAACAAGGAAGCGTTTGTCAACTTAGGTATTGTGCTCAACAACGCCA TGGCAGGACACGAACCTCAGAAGGTGTCGTTTGGGTTTTTTGCCAGGAATGGGAAATATGTTGATTGCTTGCTGTGTGTGAGCAAGAAGCTTGACCAAGA AGGCGCTGTCACGGGCGTTTTCTGCTTCCTCCAGCTGGCGAGCCAAGAGCTTCAGCATGCTCTTCATGTCCAGAGGCTCTCGGAGCAAACTGCGTTGAAG AGGTTGAAAGCATTGGCGTACATCAAGAGACAGGTCAGGAACCCTTTGTCCGGGATCGTGTTCTCGAGGAAGATGCTGGAGAGGACCGAGCTTGGTGCGG AGCAGAAACAGCTCTTGCAGACTAGTGCACAGTGTCAACGCCAACTCAGTAGGATCCTTGATGACTCGGATCTCGATACCATCATAGAAGGCTGCTTGGA CCTGGAAATGGTGGAGTTCAACCTACACGAAGTAATGGTTGCATCGATCAGTCAAGTTATGATGAAGTGCAACGGGAAGGGGATTCGAATCATTAACGAT GCACCAGACGAGATAATGACCGAGACCTTATACGGGGACAGCATTCGGCTTCAGCAAGTTCTGGCAGATTTCTTGTTGATATCTGTCAACTCTACCCCAT CGGCTGGACAGCTTACTCTTGCCGCTAGCTTGACCAAGGATCAGCTAGGCCAGTCTGTACATCTCGTACACCTCGAGCTCAGGATAACACACGCTGGACC GGGGATACCGGAAGGGGTGCTGAGCCAGATGTTTGGAACAGAAGGGGATACGTCGGAGGAAGGGATCGGATTGTTGGTGAGCATGAAGCTGGTGAAGCTC ATGAATGGAGATGTGAAGTATTTAAGGGAGTCGGGTAAGTCTAGTTTCATCATATCTGTTGAACTTGCTGCTGCTGCCGCACATAAGTTGAGAACCTAA
AA sequence Show only first row Show all	>Lus10007594 pacid=23148122 polypeptide=Lus10007594 locus=Lus10007594.g ID=Lus10007594.BGIv1.0 annot-version=v1.0 MSTSRPTQSSNSRRSDRVIAQTTVDAKLHADFEESGSSFDYTSSIRVTSSSSSLPPPQQQNQVRPKSDKLTTAYLHHIQKGKLIQPFGCLLALDDKTYRV IAYSENAPEMLTMVNHAVPTVGEIPTLGIGTDLRTIFTPPSANALIKALGFGDIALLNPILVHCKTSGKPFYAIVHRVTGSFIVDFEPVKPYEVAATTKG ALQSYMLAAKAITRLQGLPSGSMERLCDTMVQEVFELSGYDRVMAYKFHDDDHGEVVSEITKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRVK HVKVLQDDGLDFELTLCGSTLRAPHSCHLQYMENMDSIASLVMAVIVNEEGDDNNGDGQELQQKRKRLWGLVVCHNTTPRFVPFPVRSACEFLAQVFAIH VNKEIELENQIVEKNILRTQTLLCDMLMRDAPLGIVTQSPNVMDLVKCDGAALLYKNKVWRLGATPSDFQIQDVARWLSEYHMDSTGLSTDSLYDAGYPG ALALGDVVCGMAAVRISSHDLLFWFRAQTASEVRWGGAKHEHGEEDDGRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDGEGAVDVD AKMIHTRLSDLKIDGMQELEAVTGEMVRLIETATVPILAVDVDGLVNGWNSKIAELTGLSIDEAIGKELLTLVEESSVQTVQQMLAFALEGKEEQNVQFE IKTHGTKSNHGPISLVVNACASRDLQESVVGVCFVAQDITGHKIVMDKFTRIEGDYKSIVQNPNPLIPPIFGADEFGWCSEWNTAMTTLTGWNREAVVDK MLLGEVFGTNTSSSCRLKNKEAFVNLGIVLNNAMAGHEPQKVSFGFFARNGKYVDCLLCVSKKLDQEGAVTGVFCFLQLASQELQHALHVQRLSEQTALK RLKALAYIKRQVRNPLSGIVFSRKMLERTELGAEQKQLLQTSAQCQRQLSRILDDSDLDTIIEGCLDLEMVEFNLHEVMVASISQVMMKCNGKGIRIIND APDEIMTETLYGDSIRLQQVLADFLLISVNSTPSAGQLTLAASLTKDQLGQSVHLVHLELRITHAGPGIPEGVLSQMFGTEGDTSEEGIGLLVSMKLVKL MNGDVKYLRESGKSSFIISVELAAAAAHKLRT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09570		FHY2, HY8, FRE1...	ELONGATED HYPOCOTYL 8, FAR RED...		Lus10007594 [exp]	0	1
AT2G28260		ATCNGC15	cyclic nucleotide-gated channe...		Lus10016097 [exp]	1.7	0.9496
AT1G70580		GGT2, AOAT2	GLUTAMATE:GLYOXYLATE AMINOTRAN...		Lus10006203 [exp]	2.0	0.9635
AT1G10740			alpha/beta-Hydrolases superfam...		Lus10030904 [exp]	2.8	0.9445
					Lus10020564 [exp]	3.7	0.9597
AT4G14368			Regulator of chromosome conden...		Lus10027273 [exp]	5.5	0.8967
AT4G21910			MATE efflux family protein (.1...		Lus10039673 [exp]	5.7	0.9298
AT1G73830	bHLH	bHLH050, BEE3	BR enhanced expression 3 (.1.2...		Lus10038939 [exp]	5.9	0.8943
					Lus10030905 [exp]	6.3	0.9299
AT5G19730			Pectin lyase-like superfamily ...		Lus10041815 [exp]	6.7	0.9195
					Lus10036436 [exp]	7.0	0.9347

Compare expression of checked genes

Lus10007594 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.