Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19040 1196 / 0 EDR2 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) AT5G45560 1188 / 0 Pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein (.1) AT2G28320 367 / 4e-116 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) AT3G54800 340 / 3e-106 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2) AT5G35180 272 / 8e-80 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) AT5G10750 214 / 1e-63 Protein of unknown function (DUF1336) (.1) AT5G24990 188 / 4e-54 Protein of unknown function (DUF1336) (.1) AT5G25010 182 / 5e-52 Protein of unknown function (DUF1336) (.1) AT1G06050 180 / 8e-51 Protein of unknown function (DUF1336) (.1) AT5G25020 149 / 2e-40 Protein of unknown function (DUF1336) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012149 [exp] 1453 / 0 AT4G19040 1227 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Lus10021465 [exp] 397 / 1e-127 AT2G28320 1056 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) Lus10016094 [exp] 351 / 8e-110 AT2G28320 979 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) Lus10023522 [exp] 287 / 4e-86 AT2G28320 883 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) Lus10040011 [exp] 238 / 5e-68 AT5G35180 820 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Lus10019068 [exp] 225 / 1e-64 AT5G35180 589 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Lus10019591 [exp] 224 / 3e-63 AT5G35180 931 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Lus10040015 [exp] 221 / 8e-62 AT5G35180 1034 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Lus10042428 [exp] 198 / 4e-57 AT5G10750 444 / 6e-158 Protein of unknown function (DUF1336) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G100600 [exp] 1230 / 0 AT4G19040 1182 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Potri.001G132900 [exp] 1218 / 0 AT4G19040 1159 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Potri.008G213000 [exp] 1040 / 0 AT4G19040 1017 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Potri.008G038800 [exp] 354 / 2e-111 AT3G54800 922 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2) Potri.018G113100 [exp] 301 / 5e-91 AT5G35180 1028 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Potri.009G011200 [exp] 223 / 3e-62 AT2G28320 1071 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) Potri.018G014234 [exp] 196 / 1e-56 AT5G10750 428 / 5e-152 Protein of unknown function (DUF1336) (.1) Potri.010G223400 [exp] 205 / 3e-56 AT3G54800 922 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2) Potri.017G027700 [exp] 172 / 4e-48 AT1G06050 399 / 4e-140 Protein of unknown function (DUF1336) (.1) Potri.007G130400 [exp] 168 / 2e-46 AT1G06050 390 / 1e-136 Protein of unknown function (DUF1336) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF01852 [flax] [poplar] START START domain CL0209 [flax] [poplar] PF07059 [flax] [poplar] DUF1336 Protein of unknown function (DUF1336)
Representative CDS sequence Show only first row Show all	>Lus10007596 pacid=23148125 polypeptide=Lus10007596 locus=Lus10007596.g ID=Lus10007596.BGIv1.0 annot-version=v1.0 ATGTCGAAGGTGATATACGAAGGATGGATGGTGCGGTACGGGAGGAGGAAGATCGGGCGATCCTTCATCCATATGAGGTACTTCGTGCTGGAGCCAAGAG TTCTGGCTTACTACAAGAAGAAACCGCAGGATAATCAGGTGCCGATCAAGACCCTCTTGATCGATGGCAATTGTAGGGTGGAGGATCGAGGCTTGAAGAC TCATCATGGACTTATGGTTTATGTGCTATCAGTATACAACAAGAAGGAGAAATATCATAGAATCACGATGGCAGCATTTAACATCCAGGAAGCTCTGATC TGGAAGGAAAAGATTCAGTTTGTAATTGACCAGCATCAAGAGTCTCAGGCGTCAAATGGGAACAAATATGTATCCTTTGAGTATAAGTCTGGGATGGATA ACGGAAGGACTGCTTCCTCCTCAGACCATGAAAGCCAGTTTAGTGCTCAAGAGGATGAAGAGGACTCTCATCCAAATTTATTGAGGAGGACCACTGTTGG AAATGGTCTCCCTGATTCGGTATTTGACTGGACAAGAGAAATTGACTCGGAACTAACCAACCAAAATGCTAACAATCAAGCATTTTCCAGAAAGCATTGG CGACTGCTGCAATGTCAAAATGGACTTCGCATTTTTGAAGAGCTTCTTGAAGTTGAATACCTTCCAAGGAGCTGTAGTAGAGCGATGAAGGCTGTCGGTG TTGTCGAGGCTACCTGTGAAGAGATATTTGAACAAGTAATGAGCATGGATGGGACACGGTTTGAGTGGGATTGTACTTTCCAGTATGGTAGTTTGGTTGA GGAGGTTGATGGGCATACTGCAGTTCTGTATCATAGGCTTCAACTGGATTGGTTTTCAATGCTTGTCTGGCCACGTGATCTTTGCTATGTACGCTATTGG CGCCGAAATGATGATGGAAGTTATGTTGTCTTGTTTCGCTCAAGAGAACACGAGAATTGTGGTTCACAACCAGGTTATGTGCGGGCTCATATTGAGAGTG GGGGTTTCAACATTTCTCCTCTAAAACCCAGGAACGGGAGACCTAGAAGTCAGGTCCAGCACCTAATACAAATTGATTTGAAAGGATGGGGTGTCGGCTA TGTTTCAGCGTTTCAGCAGCACTGTCTCCTTCAGATGTTGAATAGTGTCGCTGGACTGCGTGAATGGTTCGCCCAATCAGATGAAAGAGGTGCTCCGCCA AGAATCCCTGTTATGGTCAATATGGCCTCAGCTTCCATTTCATCCAAGAAGAACTTAAAGTTGCAGGAGTCGTCAGTTCATCATCGTTCTGCTTCTCTTG ATCAAATGACCGCCGCAGGCAGAAACTCGGCCATGATGGATGAGTACTCTGACGAGGACGAAGAATTTCAAATTGCTGAAGAAGAACAGGAGGCTTACGC TCTTAGTCAGGAGATTGATGGGAAGAAAACAGGTGAATGCTTGCTGGGAAATTCCATATCATACATTAATTTTTTTCCCCGATATGAAGCTTTAGAGGAA CCTGTAGATGATATCGACCATTCCTGGTTTTCTGGTAATCTACGATATGATGAACGAGAAAATGCCCGCGATAGCTGGAAAATTTCCGACGGGAACAACT TCAGAGTCCGTAGCAGAAACTTCTGCTATGACAAATCAAAGATCCCGGCAGGAAAACATTTGATGGATCTAGTTGCTGTTGATTGGTTCAAAGACACGAA AAGAATGGATCATGTCGCTAGGCGTCAAGGATGCGCAGCACAAGTTGCTTCAGAGAAAGGACTTTTCACTGTGGTGCTCAATCTGCAAGTCCCCGGTTCA ACACATTACAGTATGGTGTTTTACTATGTGACGAAAGCAGTAGTCCCTGGATCTCTCTTGGAGAGGTTCATTGATGGCGACGACGAATTTCGCAACAGTA GATTTAAACTGATTCCGTCGGTTCCCAAGGGATCATGGATCGTACGCCAAAGTGTTGGAAGTACTCCGTGTTTATTGGGGAAAGCGGTCGACTGCAACTA TATACGTGGTCCAAAATACCTCGAAATCGATGTCGATATCGGTTCCTCCACTGTTGCCAACGGAGTACTAGGGCTTGTGATTGGTGTCATAACTACCTTG GTCGTCGACATGGCTATCCTTGTACAGGCAAACACAACCGACGAGCTGCCCGAACGTTTGATCGGGGCGGTTCGGGTATCCCACATAGAGTTGTCATCTG CAATTGTCCCCAACTTGGATCCATCTTAG
AA sequence Show only first row Show all	>Lus10007596 pacid=23148125 polypeptide=Lus10007596 locus=Lus10007596.g ID=Lus10007596.BGIv1.0 annot-version=v1.0 MSKVIYEGWMVRYGRRKIGRSFIHMRYFVLEPRVLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGLMVYVLSVYNKKEKYHRITMAAFNIQEALI WKEKIQFVIDQHQESQASNGNKYVSFEYKSGMDNGRTASSSDHESQFSAQEDEEDSHPNLLRRTTVGNGLPDSVFDWTREIDSELTNQNANNQAFSRKHW RLLQCQNGLRIFEELLEVEYLPRSCSRAMKAVGVVEATCEEIFEQVMSMDGTRFEWDCTFQYGSLVEEVDGHTAVLYHRLQLDWFSMLVWPRDLCYVRYW RRNDDGSYVVLFRSREHENCGSQPGYVRAHIESGGFNISPLKPRNGRPRSQVQHLIQIDLKGWGVGYVSAFQQHCLLQMLNSVAGLREWFAQSDERGAPP RIPVMVNMASASISSKKNLKLQESSVHHRSASLDQMTAAGRNSAMMDEYSDEDEEFQIAEEEQEAYALSQEIDGKKTGECLLGNSISYINFFPRYEALEE PVDDIDHSWFSGNLRYDERENARDSWKISDGNNFRVRSRNFCYDKSKIPAGKHLMDLVAVDWFKDTKRMDHVARRQGCAAQVASEKGLFTVVLNLQVPGS THYSMVFYYVTKAVVPGSLLERFIDGDDEFRNSRFKLIPSVPKGSWIVRQSVGSTPCLLGKAVDCNYIRGPKYLEIDVDIGSSTVANGVLGLVIGVITTL VVDMAILVQANTTDELPERLIGAVRVSHIELSSAIVPNLDPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19040		EDR2	ENHANCED DISEASE RESISTANCE 2 ...		Lus10007596 [exp]	0	1
AT5G24360		AtIRE1b, ATIRE1...	ARABIDOPSIS THALIANA INOSITOL ...		Lus10030730 [exp]	1.0	0.8836
AT5G24360		AtIRE1b, ATIRE1...	ARABIDOPSIS THALIANA INOSITOL ...		Lus10013212 [exp]	2.0	0.8676
AT3G61710		AtBECLIN1, ATAT...	BECLIN1, AUTOPHAGY 6 (.1.2.3)		Lus10012631 [exp]	2.0	0.8349
AT2G41700		AtABCA1, ABCA1	Arabidopsis thaliana ATP-bindi...		Lus10012755 [exp]	2.2	0.8279
AT4G36760		ATAPP1	ARABIDOPSIS THALIANA AMINOPEPT...		Lus10024034 [exp]	2.6	0.8224
AT2G15900			Phox-associated domain;Phox-li...		Lus10027939 [exp]	3.5	0.8471
AT5G35200			ENTH/ANTH/VHS superfamily prot...		Lus10005184 [exp]	5.5	0.8136
AT1G30000		MNS3	alpha-mannosidase 3 (.1)		Lus10042830 [exp]	6.9	0.8192
AT1G02120		VAD1	VASCULAR ASSOCIATED DEATH1, GR...		Lus10028209 [exp]	7.4	0.8130
AT2G26570		WEB1	WEAK CHLOROPLAST MOVEMENT UNDE...		Lus10037354 [exp]	8.9	0.7980

Compare expression of checked genes

Lus10007596 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.