Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47960 42 / 0.0001 ATC/VIF1, C/VIF1 cell wall / vacuolar inhibitor of fructosidase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035527 [exp] 148 / 1e-44 AT4G24640 40 / 4e-04 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10027768 [exp] 145 / 1e-43 ND / Lus10040145 [exp] 118 / 3e-33 ND 40 / 4e-04 Lus10000961 [exp] 118 / 4e-33 ND 39 / 5e-04 Lus10011019 [exp] 101 / 2e-24 AT4G17610 1595 / 0.0 tRNA/rRNA methyltransferase (SpoU) family protein (.1) Lus10016317 [exp] 48 / 1e-06 AT1G47960 115 / 2e-32 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10002738 [exp] 46 / 4e-06 AT1G47960 67 / 5e-14 cell wall / vacuolar inhibitor of fructosidase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G195200 [exp] 95 / 2e-24 AT5G64620 42 / 7e-05 cell wall / vacuolar inhibitor of fructosidase 2 (.1) Potri.005G022250 [exp] 91 / 9e-23 ND / Potri.013G012800 [exp] 88 / 1e-21 ND / Potri.005G022300 [exp] 88 / 1e-21 ND / Potri.013G012733 [exp] 87 / 2e-21 ND / Potri.005G022400 [exp] 87 / 3e-21 ND / Potri.005G022200 [exp] 77 / 1e-17 ND / Potri.001G073350 [exp] 76 / 3e-17 ND / Potri.013G012766 [exp] 71 / 2e-15 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10007598 pacid=23148124 polypeptide=Lus10007598 locus=Lus10007598.g ID=Lus10007598.BGIv1.0 annot-version=v1.0 ATGGGTTCGTCCCTAAAGGTAGCGATCATATTTTTGTCACTAATTGCATTCCAATATTTCCCGTCGCTAATAACCGCAAACCCGATCTCAATTCCGCCGG TGTTTCCTCCTTCTTCGTCGCCGTCGTCTCCAATCCGCCCTCCGACTCAATTGCAAGCAGATGTATGCCGAAAGGCGGAAACCATAGACTTCAATCTTTG CGTCGAGATTATACAGTCCAACCCACAAGCCTCGTTCGTGGCCGCCGACATCAAGACCCTAGCCGGAGTCCTCCTCGAAGATGTGAAGGAGGAGTCTACG GTGCTTAGCCAGATGTTTGACGGGATCCTCCGCGACAGGAACAATCCGGCCAAGTGGAAGCCCACGTTGAAGCTTTGCGCGTCTGATTACAAGGACGCGG CGATCTTCTTCACCTCGAGAGGGCTGGGGGACGTGACAAAGAGCTTAGAGATCCACTCGGCGCTCGACAATTCGGAAAATTGCGAGAGCGAGATGGCAAA GAGCGAGGTAACGGTTGATGAGACGGTGGCTGCGGGGATTCGTAGGTGGAAAAATCTTTACGCTGTCGCTAATGGCGCCGTCCTGTATGCAGAGGATGTT TTCGGTGGGGTATCGGTTGATGACAACGGTGAAGATTATTAA
AA sequence Show only first row Show all	>Lus10007598 pacid=23148124 polypeptide=Lus10007598 locus=Lus10007598.g ID=Lus10007598.BGIv1.0 annot-version=v1.0 MGSSLKVAIIFLSLIAFQYFPSLITANPISIPPVFPPSSSPSSPIRPPTQLQADVCRKAETIDFNLCVEIIQSNPQASFVAADIKTLAGVLLEDVKEEST VLSQMFDGILRDRNNPAKWKPTLKLCASDYKDAAIFFTSRGLGDVTKSLEIHSALDNSENCESEMAKSEVTVDETVAAGIRRWKNLYAVANGAVLYAEDV FGGVSVDDNGEDY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10007598 [exp]	0	1
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Lus10013572 [exp]	4.6	0.8785
AT5G39150			RmlC-like cupins superfamily p...		Lus10003116 [exp]	9.0	0.8912
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10003226 [exp]	15.0	0.8620
AT5G50760			SAUR-like auxin-responsive pro...		Lus10003140 [exp]	16.9	0.8833
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10024009 [exp]	18.5	0.8326
AT4G38260			Protein of unknown function (D...		Lus10012251 [exp]	19.3	0.8358
AT1G64300			Protein kinase family protein ...		Lus10032357 [exp]	21.8	0.8411
AT5G51160			Ankyrin repeat family protein ...		Lus10041537 [exp]	22.8	0.8761
AT5G43200			Zinc finger, C3HC4 type (RING ...		Lus10019685 [exp]	31.7	0.8438
AT4G38260			Protein of unknown function (D...		Lus10012253 [exp]	32.8	0.8419

Compare expression of checked genes

Lus10007598 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.